Chenopodium quinoa (quinoa): 110713826
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Entry
110713826 CDS
T05764
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03020
RNA polymerase
cqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110713826
09124 Replication and repair
03420 Nucleotide excision repair
110713826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110713826
03400 DNA repair and recombination proteins [BR:
cqi03400
]
110713826
Enzymes [BR:
cqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110713826
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110713826
DNA repair and recombination proteins [BR:
cqi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110713826
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
RE_ApaLI
Motif
Other DBs
NCBI-GeneID:
110713826
NCBI-ProteinID:
XP_021747958
LinkDB
All DBs
Position
Unknown
AA seq
1817 aa
AA seq
DB search
MDTRFPYSPAEVTKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI
DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK
FKQALKIRNPKNRLKKILEACKNKRKCEGGDSMDVQDQDDEEPAKKSRGGCGAQQPTFTI
EGMKIIAEYKNTKKKSDEQEQLPEPAERKQQLTAEKVLSVLKRISDEDCQLMGFSPRYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTGKQVFNLIIPKQIN
LVRFSAWHQETETGFLTPGDTRVLIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINVTISQAKNEVKNLIRSAQEKQL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSETNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFEATYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQ
LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMRQKSDMHPMEIVEAVDKLQERLKVVP
GDDFLSKEAQKNATLFFNILLRSTLASKRVLREFKLNREAFDWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN
PEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV
SPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTDDNAEKLILRIRIV
NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA
ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVHLPSYVEGLEFGMTPARSPISGTP
YHESMMSPSYLLSPNIRHSPINDASFSPFVGGMAFSPASSPAYLSPNSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPGSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISP
SSPYSPTSQITVRHHHLTRRRRPLTPLQAQAIVQAAHMAQVQALIIAPVLLSTVQVQAIL
LVLLAIHLHQPVSIPRK
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atggatactagatttccgtattcaccagcagaggttacgaaagttcacttgattcagttc
ggaattctgagtcccgatgaaattcggcaaatgtcagtggtgcaagtggagtttagtgag
acgacggagagagggaagccgaaaccggggggtttgagtgatatgaggctcgggacgatt
gatcggaagttgaagtgtgatacatgtacagctaatatggcggaatgtcctggtcatttt
ggacatcttgagcttgctaagccgatgtttcatatcgggtttttgaagactgtactgagt
attatgcgttgtgtttgctacaattgctccaagattctggccgatgaggaagaccacaaa
tttaagcaagcattgaaaattagaaatcccaaaaaccgtttgaagaaaatattggaggcc
tgtaaaaacaaaaggaaatgtgaaggaggtgattcaatggatgtacaagatcaggatgat
gaagagcctgccaagaagagtcgtggtggctgtggtgcgcaacagccaaccttcactatt
gaaggtatgaaaattattgccgagtacaagaatactaagaagaaaagtgatgagcaggaa
cagcttcctgagcctgctgagagaaagcagcagcttactgctgaaaaggtgcttagtgtt
cttaagagaataagtgatgaagactgtcaattgatgggtttcagtcccagatatgctcgc
cctgactggatgattcttcaagttcttcctattcctccacctcctgtgagaccatctgtg
atgatggatacctcttctaggagtgaggatgatttgacccatcaattagctatgatcatt
cgtcataatgataatctgagaagacaagagaggaatggtgcgcctgcacatatcatctct
gaatttgcacagttgctgcagtttcatattgctacatactttgacaatgagctgcctgga
cagccaagagctacacaacgatcaggtagaccaatcaaatcaatatgtacaaggttgaaa
gcaaaagaaggtcgtataagaggcaatttgatgggaaaacgagtggacttctcagctcgt
actgtcattactcctgatccaaatataaacattgatgagttgggtgtgccttggagtata
gcgttaaatctcacatatccggagactgtgactccttataatctggaaaggctgaaagag
cttgttgactatggtccacatcctcctcctggtaaaactggagctaagtacattataagg
gatgatggtcagaggcttgatctccgttatttgaaaaagagtagtgaccatcatttggag
ctggggtacaaggttgaacggcatttgaatgatggggactttgtacttttcaatcgacag
cccagtctccataaaatgtccattatgggtcacagaataaagatcatgccctattccaca
tttagactgaatttgtctgttacgtcaccttacaatgctgattttgatggtgatgaaatg
aacatgcatgttcctcagtcatttgagactcgagcagaagttcttgagctaatgatggtt
ccaaaatgtatcgtctccccacaagccaacaggcctgttatgggaattgtgcaggatact
ctattgggttgccgtaaagtcacaaagagggataccttcatagaaaaggatgtttttatg
aatattctcatgtggtgggaggattttgatgggaaagttcctcagccagctatcttaaag
cccaggcctatatggactggaaagcaagtattcaatcttatcataccaaagcagataaat
cttgttagattttctgcatggcaccaggagaccgaaacagggttccttactccaggggat
actcgtgtcctgatagagaaaggagaactactttctggaacactgtgtaagaagaccctt
gggtcatccagtgggagtttaatacatgttatctgggaagaagttggaccagatgctgct
cgtaaatttttggggcatacccagtggcttgttaattactggctattgcagaatggtttt
agtattggaataggagatacaattgctgatgcatcaaccatggagaccatcaatgtgacc
atatcacaagctaaaaatgaagtgaaaaacctgattaggtctgctcaggaaaagcagttg
gagcctgaacctggtcgcacgatgatggagtcatttgaaaacagagttaatcaggttttg
aataaagctcgtgatgatgctggaagtagtgctcagaggagtctgtctgagacaaacaac
ctaaaggctatggttactgctgggtcaaaaggaagttttattaacatatcccagatgact
gcctgtgtgggacagcaaaatgttgaaggcaaacggataccttttggatttgttggtcgt
acattacctcatttcacaaaggatgattatgggccagaaagtcgtgggtttgtggaaaat
tcatacctgagaggattaactcctcaggagttctttttccatgctatgggtggtagagaa
ggtctaattgatactgctgttaaaacttctgagactggctacatacagagaaggctagtt
aaggctatggaggatatcatggtcaagtatgatggtactgtgaggaattctcttggagat
gttatacagtttctttatggtgaagatggcatggatgctgtttggatagaatctcagaag
ttggattccctgaaaatgaagaagtcagaatttgaggcgacatacagatatgagtttgat
gctgataactgggagccagattatatgttgaaagagcatgtggatgatctgaaaaccatt
cgtgagttccgtaatgtgtttgatgcagaggttcaaaaacttgaagtagatagatgtcaa
cttgcaactgatattgctaccacaggtgataattcttggccattacctgtgaatcttaag
aggctgttatggaatgctcaaaagacattcaaggttgacatgagacaaaagtctgatatg
cacccaatggaaattgtggaagcagtagataagcttcaggagaggttgaaagttgttcct
ggtgatgactttttgagtaaagaggctcagaagaatgccacactcttcttcaatatcttg
ctccgcagtacacttgccagcaaacgtgtcttgagggagttcaagcttaaccgcgaagca
ttcgattgggttattggtgaaatagagtctcggtttttgcagtcattggtagctcctgga
gaaatgataggctgtgttgctgcccaatccattggtgagcctgccactcagatgaccctg
aatacttttcactttgctggtgttagtgccaagaatgtcactcttggtgttccaaggctg
agggagatcatcaacgttgcaaagaaaattaaaactccttctctatcagtcttcttaaat
cctgaaattagcaagacaaaggagagggcgaaaaatgtgcaatgtatcttagaatataca
tgcctgcgaagtgtgactcatgccactgaagtgtggtacgatccagatcctatgagcact
atcattgaagaggatgtcgactttgtcaggtcatactatgaaatgccagatgaagaggtt
tcccctgataaaatttctccttggttgcttcgtatagaattgaaccgtgaaatgatggtg
gataaaaagttgagcatggctgatattgcggaaaaaatcaacttggaattcagtgatgac
atgacgtgtatttttactgatgacaatgctgaaaagttgatccttcgtatacgtattgtg
aatgatgaaggtcagaagggtgacatggaggatgattctgctgaggatgatgtattcctt
aagaaggttgctggtagtatgttgactgagatggcactaaagggaatcccagatatcaac
aaggtgttcatcaaacagagtaaagtaaataaatttgacgaggagaaaggttttaaggct
gaaaccgagtggatgttggatactgaaggtgtcaatcttcttgctgttatgtgtcatgaa
gaagttgattctacaaggacgacgagtaatcatttgattgaagttatggaagttcttgga
attgaggctgttcgtaaggccttgctagatgagttgcgggttgtcatttcttttgatgga
tcttatgtgaattatcgccatttggctattttgtgtgatacgatgacatatcgtggacat
ttgatggctattacacgtcatggtatcaaccggaatgatactgggcctttgatgagatgt
tcatttgaagaaacagtggatatccttcttgatgctgctgtatatgcagaatctgattat
ttgaggggtgtaacagaaaacatcatgttgggacagctagctccaattggaactggtggc
tgttcattatatcttaacgaggaaatgttgcagcatgctattgaagtccaccttccaagt
tatgtggaaggcttggaatttgggatgacacctgctcggtcgcccatttctggaacacct
taccatgagagtatgatgtctcctagctacttgcttagcccaaatatccgacattcgccc
atcaatgatgcttcattttctccatttgttggcggcatggccttctctcctgcttcatct
cctgcttatctctcaccaaattcacctggttacagccccacttctccaggatatagccca
acttctccaggatatagtccaacctctcctggatatagtccaacttccccgacttacagt
cctgggtctcctggctatagtccaacaagcccggcatattcacccacaagcccatcttac
tctcccacctcaccaagctatagccccacatctcctagctacagccccacctctccaagc
tacagccccacctctccaagctatagccccacatctccagcctacagccccacgtctcca
gcttacagcccgacatctccagcctacagcccgacatctccgtcgtacagcccgacatct
ccatcatacagccccacatctccatcttacagccccacatctccatcatacagccctact
tctccatcgtacagccctacatctcctgcttacagccctacatctccaggatatagccct
acatcaccaagttatagccctacatcacctagttatagtccaacttctccaagctataac
ccttcagccaaatacagtccatcactggcatactctccaagcagcccaagaatatcacca
tccagtccctacagccctacctcccaaattacagtccgacatcaccatcttactcgccga
cgtcgccctcttactccccttcaagcccaagctatagtccaagcagcccatatggctcag
gtccaagccctgattatagccccagttctcctcagtacagtccaagtgcaggctattctc
ctagtgctcctggctattcaccttcatcaaccagtcagtataccccgcaaatga
DBGET
integrated database retrieval system
