Chenopodium quinoa (quinoa): 110715019
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Entry
110715019 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110715019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110715019
03012 Translation factors [BR:
cqi03012
]
110715019
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110715019
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110715019
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110715019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
Dicer_dimer
nSTAND3
ATPase
NPHP3_N
NACHT
T2SSE
Motif
Other DBs
NCBI-GeneID:
110715019
NCBI-ProteinID:
XP_021749282
LinkDB
All DBs
Position
Unknown
AA seq
1232 aa
AA seq
DB search
MKDRPPSTVYVPPHQRLRSVITVPSPASPPNGSQSPVRSSSIDNHQTVNSSPNPNFDARI
CCNSQNQSGGIGHFQFNQQRNVSPSPNPKQQSKGFGNGNGNSNSFHYKFYSQPKSSNLFQ
YDRQVSDNQPSSVADEVSEEGSDREFGEFEPPSYSSGFQPASFADNVDQWKWKFNMLLRD
KDKQELISRDKKDRRDFEQIASLANSMGLYSHSYIKVVVFSKIPLPNYRFDLDEKRPQRE
VVVDCNLQRRVDAFLADYLSHKSKSVNALQNNGFSRSSSSGSIAADEGLFEQPEPLNLSN
VVMERIIRRRNLQLRDQQLAWQECSEGRKILEFRRSLPAFKERDALITAISSNQVIIVSG
ETGCGKTTQIPQFILESEIESSRGASCSIICTQPRRISAMSVAERVAAERGEKLGESVGY
KVRLEGMKGRDTRLLFCTTGILLRRLLVDRTLKGITHVLVDEIHERGMNEDFLLIVLKEL
LSHRPELKLILMSATLDAELFSSYFGGAPVVHIPGFTYPVRTHFLEDILEMSGYRMTPYN
QIDDYGPDRSWKMNKQGFRKRKSQIASVVEDALAAADFREYSTQTRESLACWNPDSMGFN
LIENLLCNICENEGPGAVLVFMTGWDDISSLKDKLQAHPILGDPNKVLVLACHSSMASSE
QRLIFEKPEDGVRKIVLATNIAETSITIDDVVYVVDCGKAKETSYDALNNTPCLLPSWIA
KVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQFPEILRTPLQSLCLQIKSLKLGSIS
EFLSSALQSPELLAVQNAIEYLKVIRALDADENLTVLGRYLTMLPMEPKLGKMLVLGAIF
NCLDPVLTIVAGLSVRDPFLTPMDKKDLAEAAKAQFSRDYSDHLALVRAYDGWKSAEKEY
SGYDYCWKNFLSVQSMKAIDSLRKEFYTLLKDTGLVDDNPSSFNGWNHGDKLVRAVICYG
LYPGICSVVHNEKSLSLKTMEDGQVHLYSNSVNAREAKIPYPWLVFNEKIKVNSVFLRDS
TAVSDSVVLLFGGNIDKGEMDGHLKMLGGYLEFFMKPMMAETYLNLKRELEDFIQLKLQN
PRMDTCAYQDLLFAIKLLVTEDKCDGRFVFCRQILKPAVTKSSISPMVPALSSRTQSGPG
GDNSKSQLQTLVTRAGYTAPTYKVKQLSNNQFRATVEFNGMQIMGRPCNNKKSAEKDAAS
EALEWLMGGTQMGNEYVNHMSMLLKKSKRCHN
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcggccgccgtctacggtgtacgtgccaccgcaccagcggctcaggtctgtt
atcaccgtcccttctccggcttctcctcccaatggctcacaatctccagttcgcagcagt
agtatcgacaatcatcaaactgttaattcaagccctaaccctaattttgatgctagaatt
tgttgtaatagtcagaatcaaagtggtggaattgggcattttcaatttaatcaacagcgg
aatgtgtctccttctcctaatccgaagcaacagagtaagggatttgggaatgggaatgga
aattcgaatagttttcactataagttctatagtcaaccgaagagtagtaatttgtttcag
tatgatcgtcaagttagtgataatcagccaagttcggttgctgatgaagtttctgaagag
gggtctgaccgcgaattcggggagtttgagccgccttcgtattcttctgggtttcagcct
gcttcatttgctgataatgtggatcaatggaaatggaagtttaacatgcttctacgagac
aaggataagcaagaattgatatccagggataaaaaagacagacgtgactttgaacagata
gcttctttggcaaatagtatgggtttatatagccattcatacatcaaagtagttgtattt
agcaagattccactgcctaactatagatttgatcttgatgaaaagcgtccccagagagag
gttgtagtagattgtaatttgcaaaggagagtggatgcttttcttgctgactacctttct
cataaatctaagagtgtaaatgctttacaaaacaatgggttttcaagatcaagcagtagt
ggtagtatagctgccgatgaaggtctctttgagcaaccagaacctctgaatcttagcaat
gttgtcatggagagaattattaggcgaagaaacttacagcttcgtgatcagcagcttgct
tggcaggaatgctctgaaggaaggaaaattcttgagtttcgcagaagccttccagcgttt
aaggagagagatgctctgataacagctatatcaagtaatcaggttataattgtctctggg
gaaacaggctgtggtaaaactacacaaattccacagtttattctggagtctgaaatagaa
tctagccgtggagcttcatgcagtattatatgtactcagccaagacgaatctcagctatg
tcagttgccgaaagggttgctgcagagcggggggagaaattgggagaatctgttggctat
aaagttcgactggagggaatgaaagggagagatacacggcttctattttgcacaacaggc
atcttgctgcgaagattacttgttgataggactttgaagggcataactcatgttcttgtg
gatgaaattcatgaacgtgggatgaatgaagattttcttcttattgtgcttaaagagcta
ctttctcacagaccggagttaaagttaattttgatgagtgcaacgttagatgctgagcta
ttctcttcttattttggtggtgctcccgttgtccatatcccgggattcacctaccctgtt
cgaactcatttccttgaagatatattggaaatgtctggatatagaatgactccttacaat
cagatagatgattatggtccagatagatcatggaagatgaacaaacagggattcaggaaa
cgaaagagtcaaattgcctcagttgttgaggatgctcttgctgctgctgacttcagagag
tacagtacacagactagggaatctttagcttgttggaatccagattccatggggtttaat
ctgattgaaaatctgttatgtaatatttgtgaaaatgaagggcctggtgctgtgctagtt
ttcatgactggatgggatgacataagttcacttaaggacaaactccaagctcatcccatc
ttgggggatccaaataaagtcttggtgcttgcttgccacagttctatggcaagttcggaa
cagaggctaatatttgagaaaccagaagatggggtgcggaaaatagtgctggctactaat
attgcggagacgagtatcaccattgatgatgtggtttatgttgttgactgtggcaaggca
aaggagacatcatatgatgccttaaataatactccttgcttgcttccttcttggattgca
aaggtttctgcccaacagagaagaggaagggctggccgtgttcaacctggagaatgttac
catctctatcctagatgtgtgtatgatgcttttgcagaataccagtttccagaaattctg
aggacgcctctacagtctctctgcttgcagatcaaaagtttaaaacttggcagtatctct
gagttcttgtccagtgctctacagtcacccgaactactggcggttcaaaatgctatagaa
tatttgaaggtcatcagggcgttggacgcagatgaaaatctcactgttctaggtcgatac
ctgacaatgctacccatggagccaaaacttgggaaaatgctggtgttaggtgccatattt
aactgcctggatcctgtattgaccattgttgctggccttagtgtaagagatccttttctg
acacctatggacaagaaagaccttgcagaggctgctaaagctcaattttcgcgtgattat
agtgaccatcttgcacttgtgcgtgcttatgatggctggaaaagtgctgagaaagaatac
agtggttatgactactgctggaaaaactttctctcagtacagtccatgaaagcaattgat
tcccttcggaaggaattctatactttgttgaaggataccggactagttgatgacaaccca
tcttccttcaacggatggaaccatggcgacaagcttgtccgtgcagttatatgctatgga
ttgtatccaggaatctgctctgttgtgcacaatgagaaatctttatcattaaagacaatg
gaagatggtcaggtgcacctttactcgaattctgttaatgcccgtgaggcaaaaattcca
tatccatggcttgttttcaatgagaaaattaaagtcaactcagttttcctgcgtgattca
actgcagtgtcggattctgtggtgttgctatttggaggaaacattgacaaaggggaaatg
gatggacatctgaaaatgctgggaggatacttggaattttttatgaaacctatgatggca
gaaacatacttgaacctgaagagagaattggaggatttcatacagctcaaactccaaaat
cccagaatggatacatgcgcttatcaggaccttctgtttgccattaagcttcttgttaca
gaggacaaatgtgatggtcgatttgtgttttgccgccagattctaaagcctgctgttact
aaatcatctatctcaccaatggttccggctttgtcttctagaactcaaagtggacctggc
ggtgataactctaagagtcaacttcaaactttagttacaagggccgggtatactgcccct
acatataaagtgaagcaactgtcaaataatcagttcagagctactgtagagttcaatgga
atgcagatcatggggcgaccttgcaacaacaagaagagtgcagagaaagatgcagcttct
gaagctctagagtggcttatgggtggtacccagatgggcaatgaatatgttaatcacatg
tcaatgctgctaaaaaagagcaagaggtgtcacaactga
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