Chenopodium quinoa (quinoa): 110717709
Help
Entry
110717709 CDS
T05764
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110717709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110717709
03009 Ribosome biogenesis [BR:
cqi03009
]
110717709
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110717709
Spliceosome [BR:
cqi03041
]
Complex A
U1 snRNP components
U1 related factors
110717709
Complex B
110717709
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110717709
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110717709
NCBI-ProteinID:
XP_021752168
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MANAEAASAAAGPRYAPDDPTLPSPWKGLIDGSSGLTYYWNPETNITQYEKPGSVPPPVP
SGVPHVDNASPATVQQVPQHVQTADASQYPQQYMNQLSHQQGQFQGPLAGQISQQQGQYQ
GPPTGQMAQQQPAQVPPAGQQQYAHYGQGLAQRGSQIGQAPMQQGQAAQQHHYGSQMTQQ
SGQQLPQQGSQTVQLPVQHSSQQLGKQAPGQQGPAVGQSQGHHFMPHQMHYAAYQQPPML
PQGQQNAQPHPQLMPQGPQFSYQQDNRNAIPQQQDDSDISKIKQTGTSISQVEPSGRAAG
HAPPSVNASNHGLHASPLSGQSIPFASSMHMHQPPLNVKLQESRNDIVNPQHASTYQNQM
GQSMMNSQQHGLSPVGRNLCYDETQQLRSGPGYHFNANKEAPMTAPHHPNLAALPMARNP
QDLRMGAFPHQNAPPGHDGNMNMISAHGVHNHANVDLPITNQPFLRPSPIMPGSSDVMNI
SSVEAYRQQHEVTASGENVPAPFMTFDATGFPPEILREIHSAGFSSPTPIQAQTWPIALQ
NKDIVAIAKTGSGKTLGYLMPAFMHLRQRRNNPRIGPTVLVLAPTRELATQILEEGNKFG
RSSRISCTCLYGGAPKGPQLEELRRGADIVVATPGRLNDILETRNIDLRQVSLFVLDEAD
RMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDELAAN
KSITQYVEVVPQMEKQRRLEQILRAQERGSKVIVFCSTKKLCNDLARSIGRSFPAAAIHG
DKSQSERDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTG
RAGAIGMAYTFLSEQDWKHAGDLVKVLEGANQQVPPQVREMALRGGPAFNKDRNGMNRYE
SAPGPAFAGGGRWDSGGRGGMRDRDGDIGGRGGGGFGGFRGGMRNDGFGGRGMRDRDDFG
RGGRGDFGGRGNRGGRGGFGGPSGGYGGRSRDDFGSNERFNSRDGGFSRGRGRGRFDNNR
RDVTPRSRGRSYSSSPEKVRTWGGYSRSVSRSRSRSRSRSWSRSRSPRRSYSRSYSRSRS
RGRSRSRSNERPVRRERRPSGFDKLPEPENQEQKDLAANNVGPPAEPQITNNNSIPVYDA
GAKLGMKDELTVFSGVVNQSDPQAGEP
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgcggaagcagcttctgctgctgctggtcctaggtatgcgccagatgatcca
acccttccaagtccttggaaagggttgattgatgggagctcaggccttacatattactgg
aatccggagacgaatatcactcaatatgaaaagccaggtagtgtacctccaccagttcca
tctggtgtaccacatgttgacaatgcatccccggcgactgtgcagcaagtaccacagcat
gtacaaactgctgatgcttctcagtatccacagcaatatatgaatcagttatctcatcag
caaggacagtttcaaggtcctctagctggacaaatttctcagcagcagggtcagtatcag
ggtccccctactggacaaatggctcagcagcagcctgcgcaagtccccccagcagggcag
cagcaatatgcacattatgggcaaggattggctcaaagaggctcgcagataggtcaagcc
ccgatgcaacagggacaggcagcacagcaacatcattatggatctcaaatgacacagcaa
agtggtcaacagttaccacaacaagggtcacagacagtgcaactccccgttcagcatagt
tctcagcagttagggaagcaagcaccggggcagcaaggtcctgctgtaggacaatcacag
gggcatcattttatgcctcatcaaatgcattatgctgcttaccagcaaccaccgatgctc
ccacaggggcagcaaaatgcacaacctcaccctcagctcatgccacaaggaccacaattc
tcgtatcaacaagataatagaaatgcaataccccagcagcaagatgattccgatatttct
aagattaagcaaaccgggacatccatttctcaggttgagccaagtggtcgtgcagctggt
catgctccaccatctgtcaatgcttccaatcatggattgcacgccagtcctctctctggt
caatcaataccctttgcttcctctatgcacatgcatcaacctccattaaatgttaaactg
caggagagtcgaaatgatattgtcaacccacaacacgcttccacttaccaaaatcagatg
ggccaatccatgatgaatagtcagcagcatggcttgtctcctgttggacgaaatctgtgt
tatgatgaaacccagcaactacgatctgggccaggatatcacttcaatgctaacaaggaa
gcaccaatgacggctcctcatcaccctaatcttgctgccctacctatggcgcgaaatccg
caggacttgaggatgggtgctttccctcatcaaaatgcgccacctggccatgatggtaat
atgaatatgatatctgcacatggggtgcataatcatgcaaatgttgatctaccaattact
aaccaaccttttttgaggccatctccaattatgcctggttcctcagatgttatgaacatt
tcttcagtcgaggcttatcgacagcaacatgaagtgactgcttcaggagaaaatgttcct
gccccattcatgacctttgatgccactggttttcccccagagatactaagagagatacat
tctgctggattttcttcaccaactcctattcaagcacaaacatggcctattgcactacaa
aacaaagatatagtggcgattgcaaagacgggttctgggaaaacgttgggctatttgatg
cctgcatttatgcatctaagacagcggcgtaataatccacggattggtccaacagtctta
gtcttggcaccgactcgtgaacttgctacacaaattctagaggagggcaataaatttggg
agatcttccaggatttcttgcacgtgtttatatggtggagctccaaagggtcctcagcta
gaagaattgcgccgtggagctgatattgttgtggcaactcctggtcgtctcaatgacatt
cttgagacgagaaatattgatcttcgacaagtttcgctgtttgttctcgatgaggcagat
cgaatgcttgacatgggctttgagcctcaaatacgcaagatagtgaatgaaatgcctcct
cacaggcaaactctcatgtacacagcaacttggccaaaagaagtcaggaaaatagctggt
gatttgctccgcaatcctgtgcaagtgaacattggcaatgttgatgaacttgctgcaaac
aagtctatcacacagtatgtggaagttgtaccacaaatggagaagcaaagacgcttggag
cagattcttagagcccaggaaaggggctctaaagttattgttttctgctctacaaaaaag
ctctgtaatgatcttgcacgtagtattggacgcagctttcctgctgctgcaattcatggg
gacaagtctcagagtgagagagactatgtattgaatcaattccgttccgggaagtcacca
attttagttgcaactgatgttgctgccagaggccttgatataaaggacataagggtggtg
ataaattatgattttcctactggtattgaagactatgtacaccgaatcggtaggactggc
agagcaggggcaattggaatggcttataccttcctttctgaacaggattggaagcatgct
ggtgatctggttaaagtgcttgagggggctaaccagcaagtccctccacaagtgagagaa
atggctctccgtggtggtcctgctttcaataaagaccgtaatggaatgaataggtatgaa
tcagcccctggtcctgcttttgctggcggtggacgctgggattctggtggtcgtggtggc
atgagggacagagatggtgacattggaggtcgtggtggtggtggttttggcggatttcgt
ggtggcatgagaaatgatggttttggagggcgtggcatgagagatagagatgattttgga
cgtggggggcgaggagattttggtggccgtggaaataggggagggcgaggaggatttggt
gggcctagtggtgggtatggaggtcggtccagggatgattttgggtccaatgagaggttc
aacagtagagatggtggatttagccgtggccgtggtagagggcgatttgataataacagg
agagatgtgactccaaggagtagaggaaggagttacagttctagccctgagaaggttcgt
acttggggaggttatagcagaagtgtgagtcgtagtcgttcgcgaagtagaagtcgaagc
tggagccgcagtcgaagtccccgccgcagttatagccgtagctacagccgtagtcggagt
cgtggtcgtagccggagccgcagtaatgagaggcctgtcaggcgggaacgtcgtccttct
gggtttgataagcttccagaaccagaaaatcaagaacagaaggatttagcagcaaataat
gttggccctcctgcagaaccacaaataaccaataacaattctatacctgtatatgatgct
ggggcgaagttagggatgaaagatgagcttactgttttttcaggtgtggtcaatcaatct
gatccacaagctggtgaaccctag
DBGET
integrated database retrieval system
