KEGG   Chenopodium quinoa (quinoa): 110719489
Entry
110719489         CDS       T05764                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03030  DNA replication
cqi03410  Base excision repair
cqi03420  Nucleotide excision repair
cqi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110719489
   03410 Base excision repair
    110719489
   03420 Nucleotide excision repair
    110719489
   03430 Mismatch repair
    110719489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cqi03032]
    110719489
   03036 Chromosome and associated proteins [BR:cqi03036]
    110719489
   03400 DNA repair and recombination proteins [BR:cqi03400]
    110719489
DNA replication proteins [BR:cqi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110719489
  DNA Replication Termination Factors
   ELG1-RFC complex
    110719489
Chromosome and associated proteins [BR:cqi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110719489
DNA repair and recombination proteins [BR:cqi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110719489
  Check point factors
   HRAD17(Rad24)-RFC complex
    110719489
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase Rad17 AAA_16 Viral_helicase1 AAA_24 RuvB_N AAA_11 AAA_5 RCF1-5-like_lid AAA_19 nSTAND3 AAA_25 AAA_assoc_2 DNAX_ATPase_lid ABC_tran AAA_30 AAA_28 RNA_helicase IstB_IS21 AAA_18 bpMoxR MeaB NTPase_1 AAA_3 DO-GTPase1 AAA_7 KTI12 UvrD-helicase
Other DBs
NCBI-GeneID: 110719489
NCBI-ProteinID: XP_021754138
LinkDB
Position
Unknown
AA seq 330 aa
MASSSSNSGYEVPWVEKYRPNKVSDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTT
SILALAHELLGSNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD
SMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMI
IIEAEQVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVK
NMIRNVLEGKFDDACSGMKGLYDMGYSPTDIITTLFRVVKNYDMAEYLKLEFMKETGFTH
MRICDGVGSYLQLCGLLAKLSLVRETAKAA
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcatcttcttcatcgaatagcgggtacgaggtaccatgggtggagaagtacagaccc
aacaaggtttccgacatcgttggcaacgaagatgctgtctctcgccttcaagtcattgct
cgcgacggcaacatgcctaacctcatcttggccggtcctccgggtacaggaaaaacaaca
agcatactcgctcttgcacatgaacttttaggatcaaactgcaaggaaggagttctggag
ttgaatgcttcagatgataggggaattgatgttgtcaggaacaaaattaaaatgtttgca
cagaagaaagttactctcccccctgggcgacacaagattgttatactggatgaagctgac
agcatgacatctggagctcaacaagctttgagaaggacaatggaaatatactcaaacact
actcgctttgcgcttgcatgtaatacgtcttcaaaaatcattgagccaattcagagtaga
tgtgcattggtccgattttcaaggttgtcagatcaagaaattcttggtcgtctcatgata
atcattgaggctgaacaggttccatatgttccagaaggtcttgaagctataatcttcact
gctgatggtgatatgcggcaagctctgaataacttgcaggctaccttcagtggattccga
tttgtcaaccaggaaaatgtctttaaggtttgtgatcagcctcatcctttgcatgttaag
aacatgatccgaaatgtgcttgaaggaaagtttgatgatgcttgttctggtatgaaaggc
ctctatgatatgggttactcccctactgacataatcacaacacttttccgcgttgttaaa
aactatgacatggccgagtatttgaagttggaattcatgaaggaaactgggtttacccat
atgagaatttgcgatggagttggctcctatcttcagctgtgcggactgttggctaagtta
tcacttgtcagggagacagccaaagcagcctga

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