Chenopodium quinoa (quinoa): 110720340
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Entry
110720340 CDS
T05764
Name
(RefSeq) regulator of nonsense transcripts UPF2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03013
Nucleocytoplasmic transport
cqi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110720340
03015 mRNA surveillance pathway
110720340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110720340
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110720340
mRNA cycle factors
P-body specific factors
110720340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1033
NAF
Xpo1
Motif
Other DBs
NCBI-GeneID:
110720340
NCBI-ProteinID:
XP_021755043
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MTEKMDQQSQQECHSSGEHDKHDDEEAVARVEELKKSIEAKLALRQSNLKPERPDPAFLR
TLDSSIKRNTAVIKKLKQISDDQREGLMDDLRGVNLSKFVTEAVAAICDAKLKTSDIQAA
VQICSLLHQRYLDFSSSLTQGLSKVFFSGKGTEDLETDKNSKAMKKRSSLKLLLELYFVG
VIEDSSVFVNIIKDLTSLEHLKDRDATQTNLSLLATFARQGRVFLGLPLSGPEANEEFFK
GLNVTADQKKIFKKAFHGYYDAVAEVLHTEHASLRQMEHENAKILNAKGELSDDNASLYE
KLRKSYDHLYRGVSSLAEALDMQPPVMPEDGHTTRVTSGDDSSSSAGKESSAAEAVWDDE
DTRAFYECLPDLRAFVPAVLLGEADSKSSEQHAKAHDQSSDAASEPDQCHIAIEDNFEPS
VDSPTLQDGKTIEKGKDKEGMGKDKEEKGKDKEVKGKDKEEKEKSKEVDKERVKDKDADK
KGDKEKEKHKGLDGTNLETLLQRLPGSVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVP
RTSLELLPYYSRMVATLSTCMKDISSMLLQMLEEEFNYLINKKDQMNIETKIRNIRFIGE
LCKFKIAPAALVFSCLKSCLDEFTHHNIDVACNLLETCGRFLYRSPETTMRMANMLEILM
RLKNVKNLDPRHSTLVENAYYLCKPPERSARIAKVRPPVHQYIRKMLFSDLDKSSIEHVL
RQLRKLPWSECEPYLLKCFLKVHRGKYGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIR
LGLELNDFTMQQRRLAHMRFLGELYNYEHVDSSVIFETLYLILVFGHGTAEQDVLDPPED
CFRIRMVITLLETCGHYFDRGSSRRKLDRFLIHFQRYSLSKGVLPLDIEFDLQDLFADLR
PNMSRFTSVEEVNAALAELEEHEGKASSERHSENEKRSNSISRNNLVNGQGLANGVDENG
GGHEDIIGDTESDSGSGSIGDGGHDGDDDLDDENHDAGSEIEDDDDDVGLASDEDGEIHV
RQKAPTRDPKEESEFDRELKALMQESLESRKLELRSRPTLDMMIPMSILESSSKDHHGRG
LEGESGEDTLEEENGGNREVRVKVLVKRGHKQQTKQMSIPQDCSLVRSTKQKEAAELEEK
QDIKRLVLEYNDREEEELNGVGNQIMGWTQSGIGRIPSRGAWDGSGGRGSGSRHRYHHHS
GGGHFYSRRR
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaaaaatggatcaacaatcacaacaggaatgccattcttctggtgaacatgac
aaacatgatgacgaggaagccgttgcccgtgttgaagaattaaagaaatcgatagaggca
aaattggctcttcggcaaagtaacttgaagcccgaaagacctgatcctgcttttttgagg
acgctggattctagcatcaaacgtaacactgcagttattaaaaagcttaaacagataagt
gatgatcaacgtgaagggttgatggatgacttgcgaggtgtcaaccttagtaaatttgtg
accgaggcagtggccgctatatgtgatgcaaagctaaaaacttcagacattcaggctgct
gttcagatttgttctttgcttcatcaaagatacctggatttctcatcaagcctgacccag
ggcttatcaaaagtgtttttttctgggaaaggaacagaagacctggaaacggataaaaat
tcaaaagccatgaagaagcgcagctctttgaagctccttttggaattgtactttgttggt
gtcatagaagacagtagcgtttttgttaacatcattaaagatctcacaagtttggaacac
ctgaaggaccgagatgctactcagactaatctgtctttgcttgctacatttgcacgacaa
ggaagagttttcctgggccttccactatccgggccagaagccaatgaagagtttttcaaa
ggcctaaatgtcactgctgatcagaagaaaatattcaagaaggcatttcatgggtattat
gatgctgttgctgaagttctgcatactgagcatgcttctcttcgccagatggagcatgag
aatgcaaaaattttgaatgcaaaaggggagcttagtgatgataatgcatctttatacgag
aagctgcgaaaatcttatgaccatttgtatcggggtgtatcatctctagctgaagccctt
gatatgcaacctccagtgatgcctgaggatggtcatactacgagggtaactagtggggat
gattcttcttcttctgctggaaaggaatcttctgctgctgaagctgtgtgggatgatgaa
gatacaagagctttctatgagtgtttgcctgatcttagagcatttgttcctgcagtttta
ttgggggaagctgattccaaatccagtgagcaacacgcaaaggcgcatgaccagtcatct
gatgctgcctcagaacctgatcagtgtcacatagccattgaggataattttgaaccctct
gtagattctccaacattgcaggatggtaaaacaattgagaaaggaaaggataaagaaggg
atgggaaaagataaagaggagaaagggaaggataaagaagtgaagggaaaagataaagag
gagaaagagaagagtaaagaagttgacaaagagagagtaaaagataaagatgcagataag
aaaggagataaagaaaaggaaaaacacaaaggtcttgacggtaccaacttggaaactttg
ctacagcggcttccaggttctgtcagccgtgaccttattgatcagttaactgtagaattt
tgctatttgaactcaaagagtaatcggaaaaagcttgtgagggcactgttcaatgtcccc
agaacctccttagagttgcttccatattactcgcgaatggttgccacattgtctacttgt
atgaaggatatttcttcgatgctccttcagatgttggaagaggagttcaattacttgatt
aataagaaggatcaaatgaacattgaaacaaagatcaggaatatccgattcattggggaa
ctgtgcaaatttaaaatagcaccagctgcacttgtatttagctgcttaaagtcttgcttg
gatgaatttacccatcataatatagatgtggcttgcaatcttctggagacatgtgggcgg
ttcttgtatcgatcccctgaaaccacaatgcgcatggccaacatgttggagattcttatg
cggctgaaaaatgtgaagaatctggaccctcgtcatagcactcttgttgaaaatgcatat
tatctatgcaaacctccagagagatctgccagaatcgctaaagttcgccctcccgtgcat
cagtatattagaaaaatgctcttttcagatcttgacaagtcttccattgagcatgtgctt
agacaacttcggaaattgccatggagtgaatgtgagccatatctactgaaatgctttttg
aaggttcatcgcggaaaatatggacaaattcatcttattgcatcactgaccgctggactt
agtcgctaccatgatgattttgctgttgctgttgttgatgaggttttggaggaaattaga
ttgggattagagttgaatgactttactatgcagcagcgacgacttgcacacatgcgtttc
ttaggggagctatataactatgagcatgtggactcgtctgttatatttgagacactatac
ttgattcttgtttttggccatggtactgctgagcaagatgttcttgacccccccgaggat
tgtttccgtattaggatggttattacacttcttgagacttgtggacattactttgatcga
ggttcatccagaaggaaacttgatcgatttttgatacatttccagagatatagtctgagt
aagggtgttctgccacttgatattgagtttgacttgcaggatctctttgctgatctgcga
cctaatatgtcccgatttacctctgttgaagaagtaaatgctgcccttgcagaactggag
gagcatgaaggtaaggccagtagtgaaaggcattcggagaatgagaagcgttcaaacagt
atatctcgaaacaatcttgtaaatggtcaaggccttgcaaatggtgttgatgaaaatggt
gggggacatgaggatataattggggatactgaatcggattcaggcagtggctcaattggt
gatgggggtcatgatggtgatgatgacttggatgatgagaatcatgatgcaggtagtgag
atagaagatgatgatgatgatgtcggtcttgcttctgatgaagatggtgaaattcatgtc
agacagaaggcacccactcgggatccaaaggaagagtctgagtttgatcgggagctcaaa
gctcttatgcaggagagtttggaatctcgtaagctggagctgcggtcccgcccaacactt
gacatgatgataccaatgagcattttagagagttcttctaaggatcatcatggaagaggg
cttgaaggagaaagtggggaggatacattggaggaagagaatggcggaaaccgagaggtc
cgtgtaaaagttcttgtgaagcgagggcacaaacaacaaaccaaacaaatgtccatccct
caagattgttcccttgtgaggagcacaaagcagaaagaagccgccgagctcgaggagaag
caggacataaagagattggttttggagtacaatgacagagaagaggaggaacttaatggg
gttggtaaccagataatgggctggacacaatcagggattggccgaatacctagtcgtggt
gcttgggatggaagtggtgggagaggttctggatcacgtcatcggtaccaccatcattca
ggtggtggacatttctatagtcgaaggagatga
DBGET
integrated database retrieval system
