KEGG   Chenopodium quinoa (quinoa): 110721615
Entry
110721615         CDS       T05764                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03018  RNA degradation
cqi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110721615
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110721615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cqi03019]
    110721615
   03041 Spliceosome [BR:cqi03041]
    110721615
Messenger RNA biogenesis [BR:cqi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110721615
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110721615
Spliceosome [BR:cqi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110721615
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 110721615
NCBI-ProteinID: XP_021756490
LinkDB
Position
Unknown
AA seq 98 aa
MSAGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG
LYIIRGDNISIIGELDEDLDAHIELSQVRGHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtctgctggacctggacttgagcctcttgtagaccaaatgatctcagttattaccaat
gacggacgcaacatagtgggaatcttaaaaggttttgaccaggcaacaaatattattctt
gatgaatcacatgagagggttttttctaccaaggaaggagtccaacaaattgtattgggt
ttgtacatcatcaggggtgacaacataagcattataggtgagctggatgaagacttagat
gctcatattgagctatcgcaagtgaggggccatcctctgaagcctgtcattcactga

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