Chenopodium quinoa (quinoa): 110722038
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Entry
110722038 CDS
T05764
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110722038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110722038
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110722038
Spliceosome [BR:
cqi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110722038
Complex C
U4/U6.U5 tri-SnRNP related factors
110722038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
PWI
T2SSE
AAA_16
AAA_30
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
110722038
NCBI-ProteinID:
XP_021756954
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MGSDANLKSWVSDKLMTFLGYSQPTVVQYIIGLSKQASSPGDVVGKLVEFGLSSSSEIRA
FAEEIYARVPRKTSGVNLYQKQEREAAMLVRKQKTYELLDADDDDDRMPVSNAEPMKKES
HKKRFRKKTDNPEDEDDEVTVSREQKRQVKRKYSDDDDSESEEERIRDQKEKEELERHMK
EKDAARTRKLTETKLTKKEEEEAIRRSNALEQDDIDALRKVSRQEYLKKREEKKLEELRD
EIEDEQYLFDGVKLTEAEQRELRYKKEIYELVSKRRGEDASEINEYRMPDAYDDVDGGVN
QEKRFSVALNRYRDGGESGGKMNPFAEQEAWEDHQIGKATLKFGSKDKRQNAESYEYVFE
DQIDFIKASVMDGDKFESEMLTESQEESKAKTALEKLQEDRKTLPVYPYREQLLDAVRDH
QVLIIVGETGSGKTTQIPQYLHEGGYTKVGMIGCTQPRRVAAMSVAARVSQEMGVKLGHE
VGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDILFGLV
KDVARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAI
VTALQIHVTESPGDILIFLTGQEEIEAAEEILKHRTRGLGTKISELIICPIYANLPTDLQ
AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLVTPISK
ASANQRAGRSGRTGPGKCYRLYTAYNYYQDLEDNTVPEVQRTNLANVVLSLKSLGIHDLL
NFDFMDPPPSEALLKALELLYALGALNKLGELTKVGRRMAEFPLDPMLSKMIVASEKHKC
SEEIITIAAMLSIGNSIFYRPKDKQVHADTARMRFHEGNVGDHIALLKIYNDWKACDYGS
MWCFENYVQVRSMKRARDIRDQLEGLLERVEIEATTSLNDLEAIKKSITAGFFPHTGRLQ
KNGSYRTIKHPQTVYLHPSSGLAQMEPQPRWVVYHELVLTTKEYMRQVTELKLDWLIEIA
PHYYQMKDVEDASTKKMPKGKGHSAATQGKS
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggtagtgacgcaaatttaaaatcatgggtttcggacaaattaatgacatttcttggc
tactctcagcctactgtcgtgcagtatataatcggtttatcaaaacaggcttcttctcct
ggggatgttgttggtaagcttgtggaattcgggttatcatcgtcaagtgaaatccgagct
ttcgctgaagagatatatgctcgtgttccccgtaaaacttctggtgttaatctttatcag
aagcaagagagggaggcggcaatgttggttaggaaacagaagacttatgagcttctagat
gcagatgacgacgatgatcgtatgcctgtttccaatgctgagccaatgaagaaagaatca
cacaagaagcggttcaggaagaaaactgacaatcctgaggatgaagatgatgaggtgacg
gtaagcagagaacaaaaaagacaggtcaagagaaaatattctgatgatgatgattctgag
tcagaagaagaaagaatacgtgaccaaaaagagaaggaagaattggaaagacatatgaaa
gaaaaagatgctgctcgaactaggaagctaacagagacgaagttgacgaagaaggaggaa
gaagaggcaattcggagatctaatgctttggagcaggatgatatagatgcacttagaaag
gtttcaaggcaagaatacttgaagaaaagggaggaaaagaaattagaggagctcagagat
gagatcgaagatgaacagtatctatttgatggtgttaagcttactgaagcagagcaacgc
gaattaaggtacaaaaaggaaatatatgagcttgtctccaaaaggagaggagaagatgct
agtgagataaacgagtatagaatgccagatgcatatgatgatgttgacggtggagtgaac
caagagaaaagattttctgtagctttaaatcgttacagggatggtggtgaatctgggggt
aagatgaacccatttgctgaacaagaagcttgggaggatcaccagattggaaaagcaacc
ctcaaatttggttccaaagataaaaggcagaatgctgaaagctatgaatatgtctttgaa
gatcaaatcgacttcataaaggcctctgtaatggatggggacaagtttgaaagtgagatg
cttactgagtcacaggaagagtccaaagcaaagaccgctttggagaagcttcaggaggac
cggaaaaccttgccagtctatccatatcgtgaacagttacttgatgctgtccgagatcat
caggtccttataattgttggagagactggttctggaaagactactcagataccccagtac
ctccatgaaggtggatatacaaaagttggaatgattggatgtactcagccaaggagagtt
gctgccatgagtgttgctgctcgtgtttcccaagaaatgggtgtgaaacttgggcatgag
gtgggttattccatacggtttgaagattgcacatctgagaagacaattcttaagtatatg
acagatggtatgcttcttcgcgaatttcttggtgagcctgaccttgctagctacagtgtt
atcatggtggatgaggcacatgagaggacactttctacggacatattattcggattggtc
aaggatgttgctcgctttcggccagatttgaagttactcatctcaagtgcaactcttgat
gccgagaagtttagtgactattttgattctgctccaattttcaaaattccagggaggcgt
taccctgtcgaaatacactatacaaaggcacccgaagctgattatttggatgcagccatt
gttactgcgttgcagatacatgtcacagaatcacctggggatattcttatatttttgact
ggacaagaagaaattgaagcagcagaggaaatactgaagcataggactaggggccttggc
acaaagatttctgaacttattatatgccccatttatgccaaccttccaacagatctgcag
gcaaagatatttgaaccaactcctgaaggggcacgtaaggttgtgttggccacaaatatt
gctgagacttctctgacaattgatgggattaaatatgttatagatccaggtttcgtcaag
atgaagtcgtataatccacgaacagggatggagtcattgctggtgacacccatctccaag
gcatcagcaaatcaacgtgcaggtcgatctggacgaacagggccgggaaagtgctataga
ttatacactgcttacaattactaccaagatttagaggataatactgtccctgaagttcag
cgaacaaatcttgcaaatgttgtgctttcccttaaaagtcttggaattcatgacttgttg
aactttgatttcatggacccaccaccatctgaagcattattgaaagctcttgagttgctc
tatgcacttggtgccctaaataagctaggtgagctgactaaagttggtagaagaatggcg
gaatttccccttgatcccatgttatcaaagatgattgttgcttctgagaagcataaatgt
tcagaggagatcattaccattgcagcaatgctttctattgggaactcgatattttaccgc
cccaaggacaaacaagtccatgcagacactgcaaggatgagattccacgaggggaatgtt
ggagaccatattgcacttctcaagatctacaatgactggaaagcatgcgattatggaagc
atgtggtgctttgagaattatgttcaggtcaggagtatgaaaagagcaagggatattaga
gatcaacttgagggacttctggaaagggttgaaattgaagccacgacgagtctaaatgat
ttggaagctataaaaaagtcaatcactgcaggtttctttcctcatacgggaaggttacag
aaaaatggatcttataggacaatcaagcatcctcaaactgtgtaccttcatcccagttct
ggtttagcacagatggagccacaaccaagatgggtagtataccacgaactggttctgaca
acgaaggaatatatgagacaggtaactgagctaaaactggattggctgattgagatcgct
cctcattattaccagatgaaggatgtcgaagatgctagcacaaagaaaatgccaaagggt
aagggtcattcggctgctactcaggggaagtcttga
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integrated database retrieval system
