Chenopodium quinoa (quinoa): 110722072
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Entry
110722072 CDS
T05764
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110722072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110722072
03009 Ribosome biogenesis [BR:
cqi03009
]
110722072
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110722072
Spliceosome [BR:
cqi03041
]
Complex A
U1 snRNP components
U1 related factors
110722072
Complex B
110722072
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110722072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110722072
NCBI-ProteinID:
XP_021757000
LinkDB
All DBs
Position
Unknown
AA seq
1168 aa
AA seq
DB search
MANAEAASAAAGPRYAPDDPTLPSPWKGLIDGSSGLTYYWNPETNITQYEKPGSAPPPVP
SGVPHVDTASHPTVQQVPQHGQTADASQYPQQYMNQLSHQQGQFQGPLAGQISQQQGQYQ
GPPTRQMAQQQPAQVPPAGQQQYAHYGQGLAQRGSQIGQAPMQQGQGAQQQHYGSQMTQQ
SGQQLPQQGSQTVQHPVQHSSQQLGQQAPGQQGPPAGQSQGHHFMPHQMHYPAYQQPPML
PQGQQNAQSHPQLMPQGPQFSYQQDNRNVIPQQQDDSDFSKIKQTGTSISQVEPSGCAPP
SVNASNHGLQASPLSGQSVPFASSMHTHQPPLNVKLQESRNDTVNPQHASTYQNQMGQSM
MNSQQHGLSPVGRNLGYDETQQLRSGPGYHFNANKEAPMTAPHHPNLAALPMARNPQDLR
MGAFPHQNVPPGHDGNMNAISAHGVHNHANVDLPITNQPFLRPSPIMPDVMNISSVEAYR
QQHEVTASGENVPAPFMTFDATGFPPEILREIHSAGFSSPTPIQAQTWPIALQNKDIVAI
AKTGSGKTLGYLMPAFMHLRQRRNNPRIGPTVLVLAPTRELATQILEEGNKFGRSSGISC
TCLYGGAPKGPQLEELRRGADIVVATPGRLNDILETRNIDLRQVSLFVLDEADRMLDMGF
EPQIRKIVNEMPPHRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDELAANKSITQYV
EVVPQMEKQRRLEQILRAQERGSKVIVFCSTKKLCNDLARSIGRSFPAAAIHGDKSQSER
DYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGAIGI
AYTFLSEQDWKHAGDLVKVLEGANQQVPPQVRDMALRGGPAFNKDRNGMNRYESAPGPAF
AGGGRWDSGGRGGGMRDGGRGGMRDRDGDVGGRGGGFGGFRGGMRNDGFGGRGMRDRDDF
GRGGRGDFGGRGNRGGRGGFGGPSGGYGGRSRDDFGSNERFNSRDGGFSRGRGRGRFDNN
RRDVTPRSRGRSYSSSPEKVRTWGGYSRSVSRSRSRSRSRSWSRSRSPRRSYSRSYSRSR
SRGRSRSRSNERPVRRERRPSGFDKLPEPENQEQKDLAANNAGPPAEPQMTNNNSIPVYD
AGAKLGVKDEPTVFSGVVNHSDPQAGEP
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgcagaagcagcttctgctgctgcgggtcctaggtatgcgccagatgatccc
acccttccgagtccttggaaagggttgattgatgggagctcaggccttacatattactgg
aatccggagacaaatatcactcaatatgaaaagccaggtagcgcacctccacccgttcca
tccggtgtacctcatgttgatactgcatcccatccgactgtgcagcaagtacctcagcat
ggacaaactgctgatgcttctcagtatccacagcaatatatgaatcagttatctcatcag
caaggacagtttcaaggtcctctagctggacaaatttctcagcagcagggacagtatcag
ggcccccctactagacaaatggctcagcagcagcctgcgcaagtccccccagcagggcag
cagcaatatgcacattatgggcaaggattggctcagagaggctcgcagataggtcaagca
ccgatgcaacagggacagggagcacagcagcagcattatgggtctcaaatgacgcagcaa
agtggtcaacagttaccacaacaaggctcacagacagtgcaacacccagttcagcatagt
tctcagcagttagggcagcaagcaccggggcagcaaggtcctcctgcgggacaatcacag
gggcatcattttatgcctcatcaaatgcattatcctgcttaccagcaaccaccgatgctc
ccacaggggcagcaaaatgcacagtctcaccctcagctcatgccacaaggaccacaattc
tcatatcaacaggataatagaaacgtgataccccagcagcaagatgattccgatttttct
aagattaagcaaactgggacttccatttctcaggttgagccaagtggttgtgctccacca
tctgttaatgcctccaatcatggattgcaggccagtcctctctctggtcaatcagtaccc
ttcgcttcgtctatgcacacgcatcaacctccattaaatgttaaactacaggagagtcga
aatgatactgttaacccacaacacgcttccacttaccaaaatcagatgggccaatccatg
atgaatagtcagcagcatggcctgtctcctgttggacgaaatctgggttatgatgaaacc
cagcaactacgatccgggccaggatatcacttcaatgcgaacaaggaagcaccaatgacg
gctcctcatcatcctaatcttgctgccctacctatggcacggaatccacaggacttgagg
atgggtgccttccctcatcaaaatgtgccacctggccatgatggtaatatgaatgcgata
tctgcacatggggtgcataatcatgcaaatgttgatctaccaattactaaccaacctttt
ttgaggccatctccaattatgcctgacgttatgaacatttcttcagttgaggcttatcga
cagcaacatgaagtgactgcttcaggagaaaatgttcctgccccattcatgacctttgat
gccactggtttccccccagagatactaagagagatacattctgctggtttttcttcacca
actcctattcaagcacaaacatggcctattgcactacaaaataaagatatagtggcgatt
gcaaagacaggttctgggaaaacgttgggctatttgatgcctgcatttatgcatctaagg
cagcggcgtaataatccacggattggtccaacagtcttagtcttggcaccaactcgtgaa
cttgctacacaaattctagaggagggcaataaatttggtagatcttccgggatttcttgc
acgtgtttatatggtggagctccaaagggtcctcagctagaagaattacgccgtggagct
gatattgttgtggcaactcctggtcgtctcaatgacattcttgagacgagaaatattgat
cttcgacaagtttcgctgtttgttctcgatgaggcagatcgaatgcttgatatgggcttt
gagcctcaaattcgcaagatagtgaatgaaatgcctcctcacaggcaaactctcatgtac
acagcaacttggccaaaagaagtcaggaaaatagctggtgatttgctccgcaatcctgtg
caagtgaacattggcaatgttgatgaacttgctgcaaacaagtctatcacacagtatgtg
gaagttgtaccacaaatggagaagcaaagacgcttggagcagattcttagagcccaggaa
aggggctctaaagttattgttttctgctctacaaagaagctctgtaatgatcttgcacgt
agtattggacgtagctttcctgctgctgcaattcatggagacaagtctcagagtgagaga
gactatgtattgaatcaattccgttccgggaagtcaccaattttagttgcaactgatgtt
gctgccagaggccttgatataaaggacataagggtggtgataaattatgattttcctact
ggtattgaagactatgtacaccgaattggtaggactggcagagcaggggcaattggaata
gcttataccttcctttctgaacaggattggaagcatgctggtgatctggttaaagtgctt
gagggggctaaccagcaagtccctccacaagtgagagacatggctctccgtggtggtcct
gctttcaataaagaccgtaatggaatgaataggtatgaatcagcccctggtcctgctttt
gctggcgggggacgctgggattctggtggtcgtggtggaggcatgagggacggtggtcgt
ggtggcatgagagacagagatggtgatgttggaggtcgtggtggtggttttggcggattt
cgtggtggcatgagaaatgatggttttggagggcgtggcatgagagatagagatgatttt
ggacgtggggggcgaggagattttggtggccgtggaaataggggagggcgaggaggattt
ggtggacctagtggtgggtatggaggtcggtccagggatgattttgggtccaatgagagg
ttcaacagtagagatggtggatttagccgtggccgtggcagagggcgatttgataataac
aggagagatgtgacaccaaggagtagaggaaggagttatagttctagccctgagaaggtt
cgtacttggggaggttatagcagaagtgtgagccgtagtcgttcacgaagtagaagtcga
agctggagccgaagccgaagtccccgccgcagttatagccgtagctatagccgcagtcgg
agtcgtggtcgtagccggagccgcagtaatgagaggcctgtcaggcgggaacgtcgtcct
tctggatttgataagcttccggaaccagaaaatcaagaacagaaggatttagcagcaaat
aatgctggccctcctgcagaaccacaaatgaccaataacaattctatacctgtatatgat
gctggggcgaagttaggggtgaaagacgagcctactgttttttcaggtgtggtcaatcat
tctgatccacaagctggtgagccctag
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integrated database retrieval system
