Chenopodium quinoa (quinoa): 110723417
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Entry
110723417 CDS
T05764
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110723417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110723417
Enzymes [BR:
cqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110723417
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110723417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
AAA_29
Motif
Other DBs
NCBI-GeneID:
110723417
NCBI-ProteinID:
XP_021758465
LinkDB
All DBs
Position
Unknown
AA seq
452 aa
AA seq
DB search
MLGRNYENAPFLPGPRAAAPPAPAQGRATPPRQVKLERECELRIEVGENSPLRLRLLNGY
AEIYGTEIPPEIWLNFPPRLKFAIFTWHGATIEMDGGSDTSDYVADETPMISYVNVHAIL
EARRNRAKASSSDDIESSQGPRVIVVGPTDSGKSTLSRMLLSWGAKQGWKPTFVDLDIGQ
GSITVPGSIAATPIEMPIDPVEGIPLEMPLVYFYGHTSPSANVDLYKLAVKELAQTLEKQ
FSGNSESRAAGMVINTMGWIEGVGYELLLQAIDMFNADVVLVLGQEKLCSMLKDVLKTKP
KVDVVKLQKSGGVVSRPPRYRQKSRGYRIREYFYGLANDLSPHSNIANFNDLSVYRIGGG
PQAPRSALPIGAEPAADPTRVVPVNISQDLLHSVLAVSFAKDPEDIITSNVAGFIYITDV
DVQRKKITYLAPSAGELPGKFLILGTLAWLET
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgttaggacggaactatgaaaatgcaccatttctccccgggccgagggcggctgcacct
cctgccccggctcagggacgggccactccaccaaggcaagtgaagttggagagagaatgt
gaattgcgaattgaggtgggcgagaattcgcctcttcgccttcggctgctaaatggatat
gctgagatatatggtacagaaattcctccagaaatttggctcaattttcctccacgcctt
aaatttgcgatctttacatggcatggagccacaattgaaatggatggtgggtctgataca
tctgattatgtagcagatgagacacctatgataagctatgttaatgttcatgccatacta
gaagcgcggaggaatagagctaaggcttcttcttccgatgatattgagtcatctcagggt
cccagggttattgtggttggtcccactgactctggaaagagtactttgtcaaggatgctt
cttagctggggagccaagcagggctggaagcctacttttgtggatttggatataggccag
ggaagtataacagtacctgggtcaattgcagcaactccaattgagatgcccattgatcca
gtggaaggaattcctcttgaaatgcctttggtttacttttatggacacacaagtcccagt
gctaatgtagatttatataaattagctgtgaaagaacttgctcaaacacttgaaaaacaa
ttttctggtaattctgaatcacgagctgctggtatggtgatcaatacaatgggttggatt
gaaggagtaggctatgagctgcttcttcaggctatagatatgtttaatgcagatgttgta
ttggttttgggccaggaaaagctttgtagtatgcttaaagatgtgctgaaaaccaagccc
aaggttgatgtagtaaaactacagaaatctggaggtgttgtctcccgaccaccaagatac
cgtcagaaatccaggggctacaggataagggaatatttctatggcctggcgaatgatctc
tcacctcattccaacattgctaatttcaatgacctgtctgtctatcgaattggcggtggt
ccgcaagcaccacgttcagctctgccaattggtgcagagcctgctgcggaccctactagg
gtggttcctgtaaacatcagccaagacttgctacattctgtgcttgctgtttcatttgcc
aaggatccggaagacataattactagtaatgttgctgggtttatatatattactgatgtt
gatgtccaaaggaaaaaaataacataccttgcaccttcagcaggagagctgccgggaaaa
tttttgatattggggacattagcttggttagaaacttga
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