Chenopodium quinoa (quinoa): 110724579
Help
Entry
110724579 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110724579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110724579
03012 Translation factors [BR:
cqi03012
]
110724579
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110724579
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110724579
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110724579
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
PhoH
AAA_16
Myosin_head
ABC_tran
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
110724579
NCBI-ProteinID:
XP_021759686
UniProt:
A0A803LJZ4
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MHSKLGLLLLCGKSIYSLCNCRNSTATYPLFNFLTSSQFNRNKFSQKLGILPYSYHFLSS
HRHFSGYAVEQFSDDEYECDFETNTASSSVANVDEWKWKLSMLLRNEQEQEIVSKDKRDR
RDFEQISNLARRMGLYCEVYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSVQRRVEGL
LQEHLDRTQLDSRKPSDGALECKADDADRNKTLDENPNAMLDDSVMERILQRRSLRLRNM
QRSWQESPEGRKMLEFRKTLPAFSEKERLLQAIAKNQVIVISGETGCGKTTQLPQYILES
EIESGRGAFCNLICTQPRRISAMAVAERVSAERGELLGESVGYKVRLEGMKGKNTHLLFC
TSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN
AELFSNYFEGAPMIHIPGFTHPVRAHFLEDVLELTGYKLTSFNQIDDYGQEKVWKTQKQL
VPRKKKNQITTLVEDALKNSSFENYSPRARDSLSCWSPDCIGFNLIEAVLCHICRKEPPG
AILVFMTGWEDISCLKEQVKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNVRKIV
LATNMAEASITINDIVYVVDCGKAKETTYDALNNTPCLLPSWISKASMRQRRGRAGRVQP
GECYHLYPRCVYDAFADYQLPELLRTPLNSLCLQIKSLQIGSIAEFLSSALQPPAPLAVQ
NAIDFLKRIGALDENEHLTNLGRYLAMLPVDPKLGKMLIMGAIFHCFDPVLTIVAGLSVK
DPFLLPQDKKDLAGIAKARFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQT
LQAIHSIRKQFSFILKDAGLINEDVSSNNKLSHNQSLVRAVICSGLFPGIASVVHRETSM
SFKTKDDGQVLLYANSVNSRYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGAL
SNGTQPGHIKMLDGYVEFFMDLNTAECYCKLKEELDKLLQKKLEDPTFDILKEGKYLMFA
VQELISGDQCDGRFVFGRESRKLKDPVDSNKLSKDGMNPKSLLQTLLMRAGHSPPKYKTK
HLKINEFRALVEFKGMQFVGKPQRNKNLAEKDAAIEALAWLTHTDNKNENQDDNSPPDVT
DNMLKLLGKRRKSKRR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcattcaaagcttggacttcttttgctctgcggaaaatcgatttattctctctgcaat
tgcagaaattcaaccgcaacatatcctcttttcaattttctgacttcttcacaatttaat
cgtaataaattcagtcaaaaactagggattttgccgtattcttatcatttcctctcttct
caccgccacttttccggttacgccgttgagcagttttccgatgatgaatacgagtgtgat
ttcgagacgaatacggcatcgtcttcggtggcaaatgttgatgaatggaaatggaaactt
agtatgttgttacgcaatgaacaagagcaagagattgtatcgaaagacaaacgagatcgt
agagattttgagcagatatcaaatcttgctagaaggatgggactttactgtgaggtgtat
gggaaagtggttgttgcaagcaaggttcctcttcccaattatcggccagaccttgatgat
aaacggccacaaagagaggtggcaattccattaagtgtacagaggagggtggaaggttta
cttcaggaacatcttgataggacgcagttagattccagaaagcctagtgatggtgcactg
gaatgtaaggctgatgatgccgacaggaacaaaactttggatgagaatccaaatgctatg
ttggatgattctgttatggaaaggattcttcagagaagaagtttgcgtttgcgtaatatg
cagagatcttggcaggagtctcctgaaggtagaaaaatgttggaattcagaaaaacactg
cctgcattcagtgaaaaggagaggctgcttcaagcaattgcaaagaatcaagtaattgtg
atatctggtgagactggatgcggtaagaccacccaacttccacagtatatattagaatct
gagatagagtctggccgcggtgccttctgtaacttaatctgcacacaaccccgaagaata
tctgctatggctgtagctgaaagagtatcagcggagagaggagaacttcttggcgaatct
gttggctataaagtccgattagaaggaatgaaagggaaaaatacccacctacttttttgt
accagtggtatattgctgcggcgcttgctgagtgatcgcaacttgaatggtgttacccat
gtctttgtagatgaaattcatgagagaggaatgaatgaagactttctattgatcgtgtta
aaagatcttctccctagacgtcgggatttgagattgattctgatgagtgcaacattgaat
gccgagttgttttccaattacttcgaaggagccccaatgattcatataccgggattcact
catcctgtaagagctcatttcttagaagatgtactggaattgacaggatacaaattgaca
tcattcaaccaaattgatgattatggacaagaaaaagtctggaaaacacagaaacaattg
gttcctaggaagaaaaagaatcagattaccactcttgttgaggatgctttgaaaaactca
agctttgaaaattacagtcctcgtgcacgggattctctgtcttgttggtcaccggattgt
attggatttaatctcattgaagccgtcttgtgtcatatatgtcgaaaggaaccgcctggt
gctattttggtattcatgacaggctgggaagatattagttgcttgaaggaacaggttaaa
gcccaccctttgctcggagacccgaacagggttttgctacttacctgtcatggttcaatg
gctacatctgaacagaaactaatatttgagaggccacccccaaatgtgcgtaaaatagtt
ttggctacaaatatggcagaggctagcattacaatcaatgacatagtctatgttgttgat
tgcgggaaagctaaagagaccacttatgatgctctgaataacaccccttgtctacttcct
tcttggatatcaaaggcttctatgcggcaacgtaggggacgagctggtcgtgtgcagcct
ggagagtgctatcatttgtatcccagatgtgtatatgatgcttttgctgactaccaactc
cctgagttgttgagaactccattaaattctctctgtctgcaaattaaaagtttacaaatt
ggcagcattgcagaatttttgtcatcagcattacagccaccagcaccattggcagtccaa
aatgctattgattttctgaaaaggattggagctttggatgagaatgagcatcttacaaat
ctcgggaggtatttggcaatgctgccagtggatcctaaacttggaaagatgcttataatg
ggtgccatcttccactgctttgatcctgtcctgacaatagtagcaggtcttagtgttaag
gatccttttcttttacctcaagacaaaaaggatctagctgggattgcaaaggccagattt
tctgctaaggattacagtgaccatatggctctcgttcgtgcatatgaaggatggaaagat
gcagagcgagagggatcggcttatgagtactgctggaggaatttcctctctgcccaaact
cttcaggcaatccattctattcggaagcagtttagtttcattttaaaagatgctggccta
ataaatgaagatgtgagctcaaataataagctgagtcataatcagtcattggtccgtgca
gtcatatgttctggcctgtttcctggcatagcatctgttgtgcacagagaaacatcaatg
tcatttaagactaaggatgatgggcaagtattactttatgcgaattcagtgaattcacgg
taccagacaattccttatccatggctggtttttggagaaaaagtaaaagtcaacacagtt
ttcatacgtgactcgacaggtgtctctgattctatattgatcctctttggtggtgctctt
agcaatgggacacagcctggacatataaaaatgttggatggctatgttgaatttttcatg
gatctgaacacagccgaatgctactgcaagctgaaggaagagcttgataagcttctacaa
aaaaagcttgaagatcctactttcgacatcctaaaagaaggaaagtatctaatgtttgct
gtccaagaactaatatcaggagatcaatgtgacgggagatttgtgtttggtcgtgaaagc
aggaaacttaaggatcctgtagacagcaataaattatcgaaagatggaatgaacccaaag
agcttgctgcagactctattgatgagagctggacattctcctcctaaatacaaaactaaa
cacctgaaaatcaatgagttcagggcactggtggaatttaaggggatgcagtttgttgga
aagccccagagaaacaagaatcttgcagaaaaggatgctgctatagaagctttggcatgg
ttgactcatactgacaacaaaaacgagaaccaggatgataattccccaccagatgtcact
gataatatgttgaaacttcttgggaaacgtaggaaatctaagcgtcgttga
DBGET
integrated database retrieval system
