Chenopodium quinoa (quinoa): 110727538
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Entry
110727538 CDS
T05764
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110727538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110727538
Enzymes [BR:
cqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110727538
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110727538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
110727538
NCBI-ProteinID:
XP_021762792
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MMKKRLFCTQASIQIENTITNTNFSKKWRIKQVKKSNFNQVLEEIKPHISNSDFIAVSLQ
KTGSYSSPWQRVLPFDTPEIAYLKAKRSSENFQLLQFAICPFTLRASKLTAYPYNFHLFP
RDELKIGVPSYTFACQTSYLTSMARLGFDFNSCIYDGISYISTAQESSIKRHPGNSMLRA
NAVQALPAASVADAVYIERIKLRIKTWKSACQDSKRLKEDPLVKALRKVVLGEHGSRPCL
DVDVCSERQVQLVLELMKEHSDDIVPLLIPTKRGGIQGLRMVLTSSKEDKILFEKELQDL
EEGQGKNVRGFREVVDLISASGKPIIAHNSLHDFAFIHSKFLSSLPSSIDEFKHSLSSYF
PYIIDMGHLMKEFNPSGTMNNLPAASSFLRNRFFAPIDIDIPLKGTPDEMNEGKIHGHNV
LQISHLFAKLYSIIKRGPQHINEDNSLVLKNFANIFDPCSCPLENSDEDVRISSGSIRRL
SCNDIVFLWGFRSGLSAGDLKTLLCRSHEVFSAEFDVKLVDKSCAVVAFRRPGLAGAFIN
AMGSGGACHEGLTELIAEGLRAANYETYKCVYNMSKWDSNLADSLDQVMMSADQFPVDSY
KRSPYEIWWDDNTVLNLDDV
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaaacgtttgttctgtactcaagcttcaattcaaatagaaaacaccattaca
aacactaatttcagcaaaaaatggagaattaagcaagttaaaaagtccaattttaatcaa
gtattagaagaaattaagccccacatttcaaattccgattttattgcagttagtcttcaa
aaaactggttcatattcatctccatggcaaagggttcttccttttgacaccccagaaatc
gcctatttgaaggcaaagcgttcttcagagaattttcagcttcttcagtttgctatctgc
cctttcactcttagggcttctaagcttactgcttacccatataatttccacctatttcca
agggatgaactgaaaattggggtgccttcttacacttttgcatgtcaaacatcgtatttg
acatccatggctcgactcggtttcgattttaattcctgcatatatgatgggatctcatat
atatccacagctcaggaatcaagtataaaacgacatccaggaaattcaatgctgagggca
aatgctgtacaagctttgccagccgcatcagttgctgatgctgtatatattgagagaatc
aaattacgaattaagacctggaaaagtgcttgccaagactcaaaaaggctcaaagaagat
ccattggtcaaagctctgagaaaagttgttttgggtgaacatggatccagaccctgtctt
gacgtggatgtttgcagtgagcgccaagtgcaacttgtccttgagcttatgaaagaacac
tctgatgacattgtccctttgttgatccctacaaaacgtgggggcattcaagggcttcgg
atggttttgacaagttcgaaagaggacaaaattctttttgagaaagaacttcaagatctg
gaggaggggcaaggcaagaatgttcgtggatttcgagaagtggttgatctgatttctgct
tcaggaaaacctattattgcacacaactcacttcatgattttgctttcattcactccaag
tttctgagctctctaccttcaagtattgacgagttcaagcactctttgagctcttatttc
ccctatatcatcgacatgggccatttaatgaaagaatttaaccctagcggaaccatgaac
aatttgcctgcagcttcatctttcttgagaaaccggttttttgcacctattgatattgat
attcctctcaaaggtacaccagatgagatgaatgaagggaagatccacggccataatgtt
ttacagataagtcatctttttgcaaaactctactccataatcaaacgtggtccgcaacat
attaatgaggacaatagcttagtgctcaaaaattttgcaaacatttttgacccgtgcagt
tgtcctcttgaaaactctgatgaggatgtcaggatttcatcaggtagcataagaagactg
agctgcaatgatatagtcttcctatggggattcaggagtggtttgtcagctggagatctg
aaaacactcctttgtagatctcatgaagttttctctgcagagtttgatgtcaaactagtg
gataagagctgtgcagtggttgcctttcggcggcctggacttgcaggagctttcattaat
gctatggggtctggaggagcttgccatgaaggcttgacggaactgattgctgagggtttg
agagcagcaaattacgaaacttacaaatgtgtgtataacatgagcaaatgggactccaat
ctggctgattctttggaccaagttatgatgtcagctgaccaatttcctgttgatagttat
aaaagaagcccatatgaaatctggtgggatgacaatactgtcctcaaccttgatgatgta
tga
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