Chenopodium quinoa (quinoa): 110732013
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Entry
110732013 CDS
T05764
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110732013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110732013
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110732013
Spliceosome [BR:
cqi03041
]
Complex C
Other components
Step II factors
110732013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
HA2_N
Motif
Other DBs
NCBI-GeneID:
110732013
NCBI-ProteinID:
XP_021767625
LinkDB
All DBs
Position
Unknown
AA seq
563 aa
AA seq
DB search
MTPEGVGTPNWVEIFVDSCVKVKSNSSGHISMGGMVSLLACYLNVPPPEDLVPVDSTYLT
YNIMTLVKIGLLSRSPVAGSYFWRYGPQGLNYLRLPRPEGRALPFGPTAADFFLPPDPDV
APYLGDAEIIVENMGEENPDVHMGGEFVDEEGGEDAAGVQHDDWPRWRADVDDRLEEVCD
GMHELLAYQRSMSRFYTTQYPQYEPPTEAFMDHLASRALRRSERRASRGDAGSSGSGVIL
RRLSFERTIHTDVLFGLLKQLINRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFP
VEILYTKQPETDYLDAALITVLQIHLTEPEGDVLLFLTGQEEIDFACQCLYDRMKFLGKK
VPELIILPVYSALPSKMQSRIFDHAPPGKRKVVVATNIAEASLTIDGIFYVVDPGFAKQN
VYNPKQGLDSLIITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRI
NLGMTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEF
PMEPPLSKMLLASVDLGCWSSHQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccctgaaggtgtcggtacgcccaattgggtggagatttttgttgatagttgtgta
aaggtgaagtccaactccagtggccatattagtatgggtggcatggtctctttgctagcc
tgttatttgaatgttccaccccctgaggatcttgtgccagtagactcgacatacttgaca
tataacatcatgactctggtcaagatcggtttattatcgcgttcccccgtcgccggtagt
tatttctggcgatacggaccgcagggtttgaactatttgagacttcctcgtcccgaggga
cgagcattaccttttggccctactgctgcagactttttccttccgcccgacccggatgtt
gctccttatttgggagatgctgaaatcatagttgagaacatgggagaggagaatcccgat
gttcatatgggcggagagtttgttgatgaggaagggggtgaggatgctgctggagtgcag
cacgatgattggcctcgatggagggctgatgtggatgatagactagaggaggtgtgcgat
gggatgcacgagctgcttgcatatcaaagaagcatgagtcggttttacaccactcagtat
ccgcagtatgagcctccaactgaggcgttcatggatcatttggcatcccgtgctttgcgt
cgttccgagaggcgtgcttctcggggcgatgccggctcttctggctctggagtcattctc
aggcggttgtcctttgagagaacaatacatacagatgtcctttttgggttgctcaaacag
ctaattaatcggaggcctgatcttcgtttgattgtcacctctgctacactggatgcagag
aaattttcaggctacttttttaattgtaatatcttcactatccctggcagaacttttccc
gtggagatattgtataccaagcaacctgagactgattacctagatgctgctttaatcaca
gtgctacagattcacttgacagagcctgaaggtgacgttctccttttccttactgggcag
gaggaaatcgattttgcatgccagtgtctttatgatagaatgaaatttcttggcaaaaaa
gtccctgaattaataattcttccagtttatagtgcccttcctagtaaaatgcaatctagg
atctttgatcatgcccctcctgggaagagaaaagtagttgtggctacaaatattgctgaa
gcttctttgaccattgatgggatattttatgtggttgacccgggatttgcaaagcaaaat
gtatataatccaaagcaggggcttgattctcttattataaccccaatttcacaagcatca
gccaagcaacgagcaggtcgtgctgggcgtacggggcctgggaaatgctatcgtttgtat
acagagagtgcatatcgaaatgaaatgtctcccacctcaattccagagattcagagaatc
aatcttgggatgactacgttgactatgaaagcaatgggcattaatgatttgctgtccttt
gattttatggatcctccttctcctcaagcacttatttctgctatggagcaattgtatagt
ctgggagcgttggatgaggaaggccttctgaccaaattgggtcggaagatggcagagttc
cccatggagcccccgttgtctaagatgcttttggccagtgtggaccttggttgttggtca
tcacaccaatga
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