Chenopodium quinoa (quinoa): 110732460
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Entry
110732460 CDS
T05764
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03013
Nucleocytoplasmic transport
cqi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110732460
03015 mRNA surveillance pathway
110732460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110732460
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110732460
5.6.2.5 RNA 5'-3' helicase
110732460
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110732460
mRNA cycle factors
Common to processing body (P body) and stress granule
110732460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
NPHP3_N
nSTAND3
PhoH
ATPase
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
110732460
NCBI-ProteinID:
XP_021768097
LinkDB
All DBs
Position
Unknown
AA seq
1290 aa
AA seq
DB search
MDSTPSNLYETASQPDTGTDDAYTFLEFNTQGAGDDDDDDFAYPQFNELSQPIRASPSTS
SSSPAWPTPSDSIVAAEIKEPHQVSEPHSASSSGGPSKGRGGGGGVQGVASVVDSLAAGM
SGLNFEETAGDDDGFVDQFGKGVGDFSEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGN
TSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCR
EPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKIEELWK
TNPDASLEDLEKPGVDDEPQPVVLKHEDAFQYQNVFAPLIKLEADYDKMMKESQSKDNLT
VRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEV
ALELRASQGVPVDITHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVE
MQIVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAK
QGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTS
EKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREIAQSADVLCCTCVGAGDPRLANFR
FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV
LLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFY
VQMGQEEISASGTSYLNRTEAANVEKIVTSFLRSGVVPSQIGVITPYEGQRAYIVNYMSR
NGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYG
IVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLSNLKQSMVQFQKPKKIYNDRRLFYGA
AAGVVPNDNVSSVSTTGASADRRGSRGRGYMPPGVPNGTHKPAMHPSGFPMTRVPLPPYH
GAPPSQPYAIPSRGAVHGPVGAVPQVPQPGSRGFGAGRGSSAPIGSHLPHQQGSQQPVGS
LGPSFNFPLDSPNGQPTIGGPLSQPGFVSNLPVQGPSQSFRDGFSMGGMSQDFLGDDFKS
QGSHVPYNIAEFSTQASQSGYSVDYATQGPQSGFPGSFLNQNSQAGYSRFGSGSDFMSQD
YMGHGSQGLFTQVGFNDPSQDDSSQGHFGVGNVNPLQSQGPMNPLYSQPFTHYNSQPLNM
QNAQHQLPQPQQQAAQQGLNSQNQKVHYSG
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaccccgagcaatctctacgaaactgcatcgcaacccgatactggaaccgac
gatgcttacactttcctcgaattcaacactcagggtgctggagatgatgacgacgacgac
ttcgcttacccgcaattcaacgagctttcgcaaccgattcgtgcttcgccttcgacatcg
tcgtcttctcctgcttggcctactccttctgattccattgttgcagcggaaattaaggaa
ccccatcaagtttctgagcctcattcggcttcttcatctggtgggcctagtaagggtcgt
ggagggggtggtggtgttcagggtgtggcttctgttgtggactcgttggctgctggtatg
agtgggttgaactttgaggagacggcgggtgatgatgatgggtttgttgatcagtttggg
aagggtgttggggatttctctgagcatgcttgtaggtattgtggtgttcagaatcctgct
tgtgttgttcgctgtaatgtaccgtcttgccggaaatggttctgtaattccagggggaat
acttctggttctcatattgtcaatcatctggttcgagcaaagcacaaggaagtttgtctg
cataaagatagtccattgggagaaacaattcttgagtgttataattgtggttgccgtaat
gttttcctacttggatttatttctgccaagaccgagagtgtagtcgttcttctttgtagg
gaaccgtgtttaagtgtgaatgcattgaaggacatgaattgggatttgagtcaatggtgt
cctctaattgatgatcgctgtttcctttcatggcttgttaaggttccgtctgaacaagag
caacttagggccagacagatcagtgcacagcaaataaataagattgaagagctatggaaa
acaaaccctgatgcatctttggaggatcttgagaaacctggtgtagatgatgagcctcag
cctgttgttttaaaacatgaagatgcttttcagtatcaaaatgtatttgccccgctcatc
aagcttgaagctgattatgataaaatgatgaaagaatctcaaagcaaggataatcttaca
gtgcggtgggatattggtctaaataagaagcgtgttgcatattttgtttttccaaaggag
gacaatgagctgcgtcttgtacctggtgatgagttgcggctacgttactcaggagatgct
gctcatcctgcatggcagtcagttggtcatgtgattaagttgactgcacaggaggaggtg
gcacttgagttacgtgcgagtcagggagttccagttgacataactcatggttttagtgtt
gattttgtttggaagagtacaagctttgatcgcatgcagggtgccatgaaaacctttgca
gtggatgagactagtgtcagtgggtatatttatcaccatttgttgggacatgaagtcgag
atgcagattgttcgaaatactttgcctcgtcgatttggcgctccaggccttccagagctc
aatgcatctcaggtttttgctgtaaagagtgtccttcaaaagcctatcagtttaattcaa
ggcccccctggcactggaaaaacggttacctcagctgctattgtgtatcacatggccaaa
caaggtcaaggacaggtgttggtttgtgcaccaagtaatgtggctgttgatcaattggct
gaaaagataagtgctactggtctaaaggttgtcagactctgtgcaaaatcaagagaggct
gtcagttctcctgttgagcatctgacacttcactatcaggttcggcaccttgatacatca
gagaagagtgaacttcacaaattacagcaactgaaagacgaacaaggagaattgtctagc
agtgatgagaaaaagtacaaagcattgaaacgagcaacagagagggagatagctcaaagt
gctgatgtcttatgttgcacttgtgtcggtgctggagatcctcgtcttgcaaatttcaga
ttccgtcaggtactcattgatgagtctacacaagcgacagaacctgagtgtcttatacct
ctggtacttggagccaagcaggttgttcttgttggtgatcactgccaacttggtcctgtt
atcatgtgcaagaaagctgctcgagcgggacttgcacagtctctttttgagcgccttgtg
ttgcttggtgtgaaacccatcaggctgcaggttcaatatcgtatgcatccagcactttca
gagtttccttccaatagcttctatgaaggtacactccaaaatggcgtgacaatcaatgaa
aggcaatcaacaggaattgattttccatggcctgttccaaatcgcccaatgttcttctat
gtccagatggggcaagaggagataagtgctagcggtacatcatatcttaatcgcactgag
gctgccaatgttgagaaaatagtgacttctttcttgaggagcggtgtggtccctagtcag
attggggttattacaccttatgaaggacagagggcatatattgtgaattatatgtcaagg
aatggagctctcaggcagcaactttacaaggaaattgaggtggcaagcgttgattcattc
cagggaagggaaaaagattacattattttgtcttgtgttaggagtaatgaacaccaggga
attggattcctcaatgatcctcgcaggctcaatgttgcactgacacgtgcccgatatggt
attgtcatcttggggaatccgaaagttctgagcaagcagccactttggaacggcttattg
actcactataaggagcatgagtgcttggttgagggaccactcagtaacttgaagcaaagt
atggttcaatttcagaagcccaagaagatttataatgaccgtagactattctatggtgca
gcagctggtgttgtgcctaatgataacgtttcatcagtttcaaccaccggtgctagtgct
gatagaagaggtagtcgtggtagaggttacatgccacctggagtgcccaatggtacgcac
aagccagcaatgcatccttctggtttccccatgactcgagttcctcttcctccttatcat
ggtgcaccaccatctcagccatatgctattccctcacgtggtgctgtacatggccctgtt
ggagcagttcctcaagtccctcagcctggaagccggggttttggtgctggacgtggcagt
tctgcacctattggcagtcatttaccacaccagcaaggttcacaacaacctgttggaagt
cttgggcctagtttcaactttcctctggacagtcccaatggccaaccaactattggtggt
ccgttgtcacaacctggtttcgtttcaaatctgcctgtacaaggacctagccaatctttc
cgtgatgggttctctatggggggaatgtcacaggacttcttgggtgatgatttcaagagt
caaggatcacatgtcccttacaatattgctgagttttcaacacaggcttcacagagtgga
tattctgttgattatgccacacaaggaccacagtctggctttccaggaagtttcctgaac
caaaactcacaagctggatattctcgatttggtagtgggagtgattttatgtctcaggat
tatatggggcatggttctcaaggtcttttcactcaagttggcttcaatgatccatctcaa
gatgactcttcacaaggccattttggagtaggaaatgtaaacccccttcaatcacaggga
ccaatgaatcctctatattcccagcccttcacacactacaactcacaacctttgaatatg
caaaatgctcagcaccagctgccccagcctcagcagcaggctgctcagcagggcctgaac
tcgcaaaaccagaaagtccactacagtggttga
DBGET
integrated database retrieval system
