Chenopodium quinoa (quinoa): 110733000
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Entry
110733000 CDS
T05764
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110733000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110733000
03009 Ribosome biogenesis [BR:
cqi03009
]
110733000
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110733000
Spliceosome [BR:
cqi03041
]
Complex A
U2 snRNP components
U2 related factors
110733000
Complex B
110733000
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110733000
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
90S particles
Helicases
110733000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_30
AAA_33
Flavi_DEAD
AAA_7
SLFN-g3_helicase
UvrD-helicase
TsaE
NACHT
Motif
Other DBs
NCBI-GeneID:
110733000
NCBI-ProteinID:
XP_021768695
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDDNSINKLPKSNGAAAPMMMNNGIANLSINRWNGRPYSQRFFDIL
EKRKSLPVWQQKEEFLKVLHTNQTIVLVGETGSGKTTQIPQFVLEAVELESSDKRKKMMV
GCTQPRRVAAMSVSRRVAEEMDVTLGEEVGYSIRFEDCSNSRTVLKYLTDGMLLREAMTD
PLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQDYFNGAP
LMKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKI
NKEVGNLGDQVGPVKVVPLYSTLPPAMQQKIFETAPPPTKEGGPPGRKIVVSTNIAETSL
TIDGIVFVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEK
SFHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGA
LDDEGNLTRLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQK
AADEAKARFGHIDGDHLTLLNVYHAYKQNQEDPNWCYENFINQRTLKAADNVRQQLVRIM
ARFNLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLEKTGHYLTVKDNQVVHLHPSNCLD
HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLVDIAPHYYDLENFPNCEAKRVLEKLYKKRE
RDGEESKNRR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggggacagagagaaagaggaaggttagcttgttcgacgttgttgacgacaactccatt
aacaagcttcccaaatctaacggtgctgctgctccgatgatgatgaacaatggaatcgct
aatctttcgattaatcgatggaatggaaggccctattctcagcggtttttcgatattctg
gagaagcgtaaatctcttcctgtttggcagcagaaagaggagtttttgaaggttcttcat
actaatcagaccattgttttagtcggtgaaactggtagtggtaaaactacccagattccg
caatttgttttggaggctgtggaattagagtcttctgataaacgaaaaaagatgatggtt
ggttgtactcagccacgtagggtggcagcaatgtcagtctcacgtagagttgcagaggaa
atggatgtgactttgggagaagaagttggttacagcattcgttttgaagactgtagtaat
tcaagaacggttttgaagtatctgacagatggtatgttgttgagagaagcaatgacagat
cctcttttggagaggtataaagttataattcttgatgaagctcatgaaaggacattggca
acagatgtgctatttgggcttttgaaggaagtgttacgaaacagaccagacttaaagtta
gttgttatgagtgctactcttgaggctgagaaatttcaggattattttaatggtgctcct
cttatgaaagttcctggaaggctgcatcctgtggaaattttttacacccaggatcctgaa
agagactaccttgaggctgctattcgaaccgttgtacaaatacacatgtgtgaacctcct
ggtgatatacttgttttcctcactggagaggaggagattgaggatgcttgtcgtaaaatt
aataaagaagtgggaaatttaggtgaccaagttggacctgtgaaagttgttccattgtat
tctactcttcctcctgctatgcagcagaagatatttgaaactgctcctcctccaacaaaa
gagggaggtcctcctgggaggaaaattgtggtgtctactaacattgctgaaacatctttg
accattgatggtatagtatttgtgattgatcctggatttgctaaacagaaagtctataat
ccccgagttcgtgttgaatcactattggtttctcctatatcgaaggcaagtgcacaccag
agggctggtcgtgctggaagaacacaacctggtaaatgctttaggctatacacagaaaaa
agtttccataatgatctccagccgcagacttatccagaaattctgcggtcaaatctcgcg
aatactgtacttactctgaagaagcttggtattgatgatttggtacattttgactttatg
gaccccccagctccagagactctgatgcgagctttagaggtgttgaattatcttggtgca
ttggatgatgaaggtaatttgactaggcttggagagattatgagtgaatttcctttggat
ccccaaatgggaaagatgcttgtcgtgagtcctgagttcaactgttcaaatgaaatcctt
tcaatatcagcaatgctttcagttcccaattgctttgtgaggcctagggaggcccagaaa
gctgcagatgaagcaaaagctaggtttggacacattgatggagatcaccttacgctgttg
aacgtctatcatgcctacaagcagaatcaagaagacccaaactggtgttacgagaatttt
atcaaccagaggacattaaaggctgcagataatgtgagacagcaacttgtgcgcattatg
gcaaggttcaacctgaagttatgcagtaccgatttcaacagcagggattactatgtcaac
atacggaaggcaatgctgtcaggatatttcatgcaagtggctcatctggaaaaaacagga
cactatctgacagtgaaagataaccaagtggttcacttgcatccttcaaattgcttggat
cataaaccagagtgggttatatacaatgaatacgtgttgaccagccggaatttcattcgt
actgtcactgatgtccgtggagaatggcttgttgatattgcaccacactactatgacctt
gaaaacttccccaattgtgaagcaaagcgggttctggagaagctttacaagaagcgtgag
agggatggggaagagagcaagaacaggaggtag
DBGET
integrated database retrieval system
