Chenopodium quinoa (quinoa): 110733027
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Entry
110733027 CDS
T05764
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110733027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110733027
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110733027
Spliceosome [BR:
cqi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110733027
Complex B
110733027
Complex C
U2 SnRNP specific factors
110733027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-GeneID:
110733027
NCBI-ProteinID:
XP_021768731
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQQTYNFERSQQQPQRLYTPPSSSRPHDHHEDTDVDNIDFDDDRNN
VSDAGNLAADEEIDPLDAFMEGIHKEVSEAPPPKPKEKLDKYRDDDDDEDDPMESFLRAK
KDVGLTLASDALRAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVLDKRKIEPITALDHSE
IDYEAFNKDFYEEKPSISGMSEQDVTEYRNALKIRVSGFDVPRPVKTFDDCGFPPPLMSA
ITKQGYEKPTNIQCQALPIVLSGSDIIGIAKTGSGKTAAFVLPMIVHIMDQPELGKGEGP
IGVICAPTRELAHQIYLETRKFAKPYGLRVSAVYGGMSKLDQFKELKAGAEIVVTTPGRL
IDLLKMKALTLKRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILSDPVRVSVGEVGMANEDITQFVQVLPSDAEKLPWLLEKLQGMIDEGDVLVFASK
KASVDELESQLAQKGFKVASLHGDKDQASRMEILQKFKAGIYHVLIATDVAARGLDIKSI
KSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGEMVNSLIAAGQNVSV
ELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGRGGGGGGGGGRGVRGVDFGLGIGYNTES
NNAPSQTPSRAAAVNSLRTGMMAQFKSSFVAASPDSQNQATNNSNVYANKRPAMIGFVSG
GTIGGDTNRPQATPTTNFTPASGGSIGGPNSDQKSNESSRERQRERRRPSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaaattcggcttcgaaggcttcggaatcaatcgccaacaaacctacaac
ttcgaacgatctcaacaacaacctcaacgcctctacactcctccttcttcttcgcgacct
catgaccaccacgaagataccgacgtcgacaacatcgatttcgacgacgatagaaataac
gtttccgacgccggaaatctcgccgccgacgaagaaattgatccattggacgcttttatg
gagggaattcataaggaagtgagtgaagcgcccccgccgaagccgaaagagaagcttgat
aagtatagagatgatgatgatgatgaggatgatccaatggagagttttttgagggcaaag
aaagatgtagggttaacattggcgtcggatgcgcttcgagccgggtacgattccgatgag
gaggtttacgctgcggcgaaagcggttgatgctggaatggttgagtatgattctgatgat
aatccgattgtgcttgataagaggaagattgagcctattactgcattggatcatagtgag
attgattatgaggcgtttaataaggatttttatgaggaaaagccttcaatttctggcatg
agcgagcaggatgtcacagagtaccggaatgccttgaaaattcgtgtttctggttttgat
gttccaaggccagttaaaacttttgacgattgtggcttccctccaccattgatgagtgca
atcaccaaacaaggttatgaaaagcctaccaacatacaatgccaagctttaccaattgtg
ctgtcaggaagtgatattattggtatagcaaagactggttctggaaaaactgctgcgttt
gtgcttcctatgattgtgcatataatggatcagcctgagctgggcaaaggagaaggacca
atcggagtgatatgtgcacccaccagagaattagctcatcagatatatctggaaactaga
aaatttgcaaaaccttatgggttacgtgtttctgcagtctatggtgggatgtccaagctt
gatcagtttaaagaactcaaggcaggagcggagattgttgttaccactcctgggagactg
attgatttgctgaaaatgaaggcattaacattgaagagagcaacatatttggtgcttgat
gaggcagatcgaatgtttgaccttggttttgagccacagataagatctattgttggtcag
atcaggccagaccgtcagactttactcttttcagcaacaatgccccgaaaagtggaaaag
ttagcaagagaaattctttctgatcctgtacgtgtgtcagtgggggaagtaggcatggca
aatgaagatattactcagtttgttcaagtgcttccttcagatgcagaaaagttaccttgg
ctcctagaaaagctgcaaggaatgattgatgaaggtgatgttttggtttttgcttccaaa
aaggcctctgtagatgaacttgagtcccagcttgcacagaaagggttcaaagttgcttct
cttcacggtgataaagatcaggcttctcggatggagattttgcagaaatttaaggctggg
atataccatgttcttattgctacagatgttgctgctcgaggtcttgacattaagtcgatc
aagtcagttgtcaactttgacattgcaaaagatatggatatgcatgtgcatcgcattggt
agaacaggtcgtgctggtgataaagacggagtcgcatacactcttatcacacagaaagag
gccaggttcgctggggaaatggtcaacagtttgattgctgctggccagaatgtgtctgtg
gaactgatggatcttgccatgaaggatggaagattcaggtctaaacgtgatgcaaggaaa
ggaggtggaaagaagggaaaaggacgaggaggtggacgaggaggtggaggaggaggcggt
ggtggtcgaggtgttcgtggagtggattttggtttaggcattgggtataatacagaatcc
aacaatgctccctctcaaactccaagtcgggctgctgcagttaattcacttaggactggt
atgatggcacagttcaagagcagctttgtggctgcttcacccgactctcagaatcaggca
actaacaattcaaacgtgtatgccaacaagcgcccagctatgattggttttgtttcgggt
ggtaccattggtggggacaccaacagacctcaggcaacccctacaacaaatttcacgcca
gcatcaggaggcagcatcggtggtccgaattctgatcagaagagcaatgaaagctcgaga
gaaaggcaaagggaaaggcgaaggccctcaggctgggatagatag
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