Chenopodium quinoa (quinoa): 110733055
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Entry
110733055 CDS
T05764
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110733055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cqi03400
]
110733055
DNA repair and recombination proteins [BR:
cqi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110733055
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
PM0188
Motif
Other DBs
NCBI-GeneID:
110733055
NCBI-ProteinID:
XP_021768767
LinkDB
All DBs
Position
Unknown
AA seq
1305 aa
AA seq
DB search
MAPSHKVTNGRSPLVNKQYQITSFFTKADSSLPKSKPQLSPPKSKQTPFPKSQNPNPNPN
ISPGSSPPTTPSPINAKSKSKSTPKPLLVIGSQKSSPAEVNLKGNLFGEEVVNRRIRVYW
PMDEAWYEGCVNSFDKVSGKHLVEYDDGEEEMIDLSKEKIEWIEVEGGSCVKKSRKRRLR
KVSIVVDDEEEKEGEGNVGPVEDDSSDEDWGKNVVVEEEDRLEEMDLVDEEEEKEVESLK
RKRGKVGGSEAKKNSKEGDGEAANSSKKKKVEVCVFGSKPVKPVAKVQEAKSHNVLDSTT
TDASERFGIREEQKFPFLGKDRQDAKRRRPGDTDYDPRTLYLPPQFLKNLTGGQRQWWEF
KSKHMDKVLFFKMGKFYEIFEMDAHIGVKELDLQYMKGEQPHCGFPEKNFSINVEKLARK
GYRVLVVEQTETPDQLDMRRKEEGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYIMS
VNESCLVSSNKEERLYGVCVVDVTTSQVIIGQIKDDLESSTLCSLLSELRPVEIIKPAKM
LSPETERALTRYTRNPLINELLPNAEFWDAERTVREVQHFYSRINISPVPSQQKEATDAT
SSNIKDESCWLPKLISELLSAGSDGSLALSALGGILYYLKQAFLDENLLRYAKFESLPCT
DYCNVFKKPYMVLDAAALENLEIFENSKNGGSSGTLYSQLNYCVTGFGKRLLKTWLARPL
YHAESIRERQDAIAGLRENISLALEFRKELSKLPDMERLLTRLFASSEANGRNASKIVLY
EDAAKKQLQEFISALRACEVMIVACSSLGSILDNTDSKLLHHLLVPGKGLPNMSSIIKQF
RDAFDWVDANSTGRIIPLEGADAEFDSASIKIEEIESDLKRHIVEQKKLLGISSITYVTI
GKDIYLLEVPERLSGSVPKDYELRSSKKGFSRYWTPFIKKMVGELTQLQAVKESKLKCML
QDLVGHFCEHHTMWRSLVAAVAELDVLITLVIASDYYEGPTCRPSISTGINTTEVPQLAA
KSLGHPIIKSDSLGRGTFVPNDINIGGSDHATFILLTGPNMGGKSTLLRQICLAVILAQV
GANVPAEHFELSLVDRIFVRMGAKDHIMAGQSTFLTELSETASMLTSATRDSLVALDELG
RGTSTSDGQAIAESVLEHFVRKVQCRGMFSTHYHRLAIDYKRDPKVSLCHMGCQVGKGDR
GLEEVTFLYRLTQGACPKSYGVNVARLAGIPDGVLFKAAAKSKEFEAVYGRHQKRSNNSV
PDWNEKTIKFFQNLISISSSDDSSNSSIATLSQLQHQARILLEQN
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttcacacaaggtcactaatggcagatcaccattggtaaacaaacaataccaa
atcacctctttcttcaccaaagctgattcttctttacccaaatcaaaaccccaattatcc
cctcctaaatctaagcaaaccccatttcccaaatcgcaaaaccctaaccctaaccctaat
attagtccggggtcatctccccctactaccccttctcctattaatgcaaaatcgaagtcg
aaatcgacacctaagcctttgttggtaattgggtcgcaaaaatcgtctccagcggaagtg
aatttgaaggggaatttgtttggcgaagaggtggtgaatcggagaattagggtttattgg
ccgatggatgaggcgtggtacgaggggtgtgtgaactcgtttgacaaggtttctgggaag
catttggtggagtatgatgatggtgaggaggagatgattgatctttctaaggagaagatt
gagtggattgaagttgaaggagggtcttgtgttaagaagtctaggaagaggaggttgagg
aaggtgtctattgtggttgatgatgaagaagagaaggagggagaggggaatgttggtccg
gttgaggacgattcaagcgacgaggattgggggaagaatgtggttgttgaggaagaagat
cgtttggaggagatggatttggtggatgaagaagaggaaaaggaggttgagagtttgaag
aggaagaggggaaaggttggagggagcgaggcgaagaagaatagtaaggaaggcgatgga
gaggcggcgaattcaagtaagaagaagaaggttgaggtttgtgtttttggtagcaagccg
gtgaagccggttgccaaggtgcaagaggcaaaatcacataatgttcttgacagcaccact
actgatgcatcggagaggtttggtattcgtgaagaacagaagtttccattccttggaaag
gatcgacaagatgccaaaaggagacgtcctggtgatacagattatgatcccagaactctt
tatttgccccctcagtttcttaaaaatctgacgggtggccagagacaatggtgggagttt
aaatcaaagcatatggataaggtccttttctttaagatgggaaaattctatgagattttt
gaaatggatgcacatattggcgtaaaagaacttgatttacagtacatgaagggagaacag
ccacattgtggatttcctgaaaagaatttctcaatcaacgtagagaaattagcaagaaag
ggttatcgagtccttgtagtggagcagactgaaactccagaccagcttgatatgcgccgc
aaagaagagggttcgaaagacaaggtagtgaaacgagaaatatgtgctgtagtaacaaaa
ggaacattgacggagggagagatgctgtcagcaaatccagacgcttcttacattatgtca
gtgaatgaaagttgtttagtctcttcaaataaggaagaacgcctgtatggtgtgtgcgtt
gttgatgtcactacaagccaagtaattattggccagataaaggatgatttggaaagcagt
actttatgcagtcttctatccgaattaaggccagttgagattattaaacctgctaaaatg
cttagtcctgagactgaaagggcgcttaccaggtatactaggaatcccctcatcaatgag
ctgcttccgaatgcggaattctgggatgctgagaggactgttcgtgaagtccagcatttc
tacagtcggatcaatatttcgccggttccttcacaacaaaaggaagcaactgatgccacc
agctccaatataaaagatgagtcatgttggctgccaaagctcataagtgagctgttgagt
gctggaagtgatggcagtcttgcattatcagcccttggagggatcctttactacctgaaa
caggctttcttggatgaaaatttgcttagatatgcaaaatttgaatcacttccatgcact
gattactgtaatgtctttaagaaaccttatatggtgttagatgctgctgcattggagaat
ttggaaatatttgagaacagtaaaaacgggggatcctccgggacattgtactcccagctt
aattattgtgtgaccggttttgggaagaggttgctcaaaacatggctagcaaggcctctt
tatcatgctgagtcaattagggaacgacaagatgctatagcaggccttagggaaaatata
tcattggcacttgaatttcgtaaagagctatccaagttgccagacatggagaggttgctc
acgcgcctctttgctagcagtgaagctaatgggaggaatgcaagtaagattgttctttat
gaagatgctgcaaaaaagcagcttcaagaattcatatcagcattacgtgcttgtgaagtt
atgatcgtggcatgctcttctctaggttccatcctggataatactgactctaaattgtta
catcatctgttagtccctggcaaaggtctccccaatatgagttccattataaagcaattt
agggatgcttttgattgggtggatgctaatagtacaggtcgtataattcctcttgaagga
gctgatgcagaatttgattctgccagtataaagattgaggagattgaatctgatttgaag
agacatattgtggaacagaaaaaattacttgggatctcatcgattacatatgttaccatc
ggaaaggacatatacctgttagaagttcctgaaagattgagtggaagtgttcctaaagac
tatgagttacggtcatccaagaagggtttctccagatattggacaccatttatcaagaag
atggtaggggaactgacacagcttcaagcagtgaaggaatccaaactaaaatgcatgttg
caagatttggtaggacatttttgtgagcatcacacaatgtggagaagcttggttgctgct
gttgcagaactagatgtcttgattaccttggtaattgctagtgattactatgaaggacca
acatgccgtccaagtatttcaactgggatcaatactactgaagtacctcaattagcagct
aaaagtctggggcatcctataattaaaagtgattctttgggcaggggtacattcgtaccc
aatgacattaatattggtggctcagatcatgctaccttcatcttgcttactggtcctaat
atgggtggaaaatcaactcttcttcgccaaatttgcttagctgttatcttggctcaagtt
ggagcaaatgtccctgcagaacactttgagctatcacttgttgaccggatatttgttcgt
atgggggcaaaagatcacattatggcaggacagagcacattcttaacagagctctcagaa
actgcatctatgttgacatctgctacccgtgattcacttgttgcattggatgaactagga
cgtggcacttcaacttcagatggacaagcaattgcggaatctgtccttgaacattttgtc
cgcaaagtgcagtgtcgcggaatgttttctactcattaccaccgattagctattgactat
aaaagagatcccaaggtctctctatgtcatatgggatgtcaagtaggaaaaggtgataga
ggtttggaagaagtcacatttctgtacaggctgactcaaggtgcttgtcccaaaagttat
ggtgttaatgttgcacggctagctggaattcctgatggtgtactgtttaaagctgctgcc
aagtcgaaagaatttgaggctgtttatggtaggcaccaaaaaagatccaacaacagtgtc
ccggattggaatgaaaagaccattaaattcttccaaaatctgatcagtattagttcttca
gatgactcctcaaattcaagtattgccacactcagccagcttcagcaccaagctaggatt
cttttggaacaaaattga
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