Chenopodium quinoa (quinoa): 110733818
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Entry
110733818 CDS
T05764
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110733818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110733818
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110733818
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110733818
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110733818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
110733818
NCBI-ProteinID:
XP_021769583
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MEDTDGSLSFDFEGNLDTIPNIPTASNPVIQPDPNAAPSAGAAVATGGSAPADQSSGQGN
RRSFRQTVCRHWLRSLCMKGDSCGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI
KECNMYKLGFCPNGPDCRYRHAKQPGPPPAVDEVLQKIQQLTSYSYGASNRFSQQRNTNY
SQQADRSQFPHGANTANQGSVPKSIATESSNIQQQLQQPHLAGQDNIQNLPSNSSNQTGR
TATPLPQGITRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDTVEHVILVFSVNR
TRHFQGCAKMTSKIGETASGGNWKHAHGTAHYGRNFSVKWLKVCELSFNKTRHLRNPYNE
NLPVKISRDCQELEPSVGEQLASLLYLEPDGELMATLVAAESKREEEKAKGVDIENGAEN
PDIVPFEDNEEEEEEEESEEEDESFGQAPGSLAIQGRGRGRGMMWPPNFPMGRGGMRPMP
GMRGFPPGMMGVDGFNYGPGPDNFPMPDPFGMSPRPFVPYGPRFSGEFTNPSPGMMFPGR
PSQPGGVHPGGGFGMMMGPGRAPFMPGGMGIGGRGGRPMGMPPIFPSQPGPPQGGNRGPK
RDIRGSGSDWGETFGSGLDQGKLQDMSGRGDDSSNQGAEKFVSRNNLTNDDSESEDEAPR
RSRHGEGKKKRRSLDGDVPALDP
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaagacactgatggaagtttgagcttcgattttgaaggcaacctcgacactatccct
aacatccctactgcctctaatcccgtcatccaacctgacccaaatgccgccccttccgcc
ggagccgccgtcgcaactggcggttctgcccctgctgaccagtcttcagggcaaggcaat
cggcgcagcttccggcaaaccgtttgccgccattggcttcgcagcctgtgtatgaagggg
gattcctgcggcttccttcaccaatacgacaagtctcggatgcccgtctgccggttcttc
agattgtatggcgagtgtcgtgagcaggattgtgtttacaagcacaccaatgaagatatt
aaagagtgcaacatgtacaaattgggtttctgtccaaatgggccagactgtcgttaccga
catgcaaagcagcctggacctccgcctgctgttgacgaagtacttcagaagatccagcaa
ctcacctcatacagttatggtgcctcaaatagattttctcaacaacggaatacaaattat
tctcagcaagcagacagatcgcagtttccacatggtgctaacactgcaaatcaaggttca
gtcccaaaatctatagcaacagagtcttccaacatacagcaacaattacagcagcctcat
ctggctggtcaggacaacatacaaaatcttcccagtaattcatctaatcaaacaggcagg
acagctactccacttcctcaagggataactaggtattttattgtgaagagctgcaatcgt
gaaaacttggagttatctgttcaacaaggtgtatgggctacccaaagaagcaacgaagcc
aaattgaatgaagcttttgatactgttgagcatgtaatcttagttttttctgttaaccgt
actcgacattttcagggctgtgcaaagatgacatcaaaaattggtgagactgctagtggt
ggtaactggaagcatgcacatgggacagcgcattatgggagaaatttctcagtcaaatgg
ttaaaggtgtgtgagctgtctttcaacaaaactcggcatttgaggaatccttacaatgag
aatttgccagtgaagattagtagagattgccaggagcttgagccttctgttggggagcag
ctggcttccttgctttatcttgaacctgacggtgaacttatggcgactctagttgcagct
gaatccaaacgcgaagaagagaaagcgaaaggagttgacatagaaaatggagctgagaat
ccagacatagttccatttgaggacaatgaagaggaggaagaggaggaagaaagtgaagaa
gaagacgagagttttggtcaggcacctgggagtcttgctattcaaggcagaggaagggga
agagggatgatgtggccaccaaattttcccatgggtcgtggaggtatgcgtcccatgcct
gggatgcggggctttcctcctggcatgatgggggtggatggtttcaactatggacctgga
cctgacaactttccaatgcctgatccttttggcatgagtcctcgtcctttcgtgccctac
ggcccaaggttctccggtgaatttacaaatccttcacctggtatgatgtttcctggtcgg
ccttcacaacctggaggggtacatcctggtggtgggtttgggatgatgatgggccctggg
cgtgctccattcatgcccggaggaatgggtatcggtgggagaggtggtcgaccaatgggt
atgcctcctatctttccttcccagcctggaccacctcaaggtggcaatcggggtcctaag
agggatattagaggatcaggtagtgattggggtgagacatttggatcaggtctagatcaa
gggaagttgcaggatatgagtggacgtggtgatgactcatcaaatcaaggtgctgaaaaa
tttgtctctcgaaacaatctcacaaatgatgacagcgaaagtgaggatgaggctcctagg
aggtcaagacatggtgagggaaagaaaaaacgtcgaagcttggatggtgatgtgcctgct
ttagacccatga
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