Chenopodium quinoa (quinoa): 110733840
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Entry
110733840 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110733840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110733840
03012 Translation factors [BR:
cqi03012
]
110733840
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110733840
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110733840
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110733840
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
Nop5_56-rel_N_Arc
FoP_duplication
BEX
Rad17
T2SSE
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110733840
NCBI-ProteinID:
XP_021769604
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MSMRCFTFPFPFTTSVPTTFSLLKHLTSSSFSSSISKPPLLLLHCSLSTSMSSRPNFQGG
RRGGGGNRGGGNRGGGGRGGGGRGGGGGEQRWWDPVWRAQKLAQKAAEYEVLDENEWWNK
MEGFQKGGEQELIIKRLFRREDQQLLSDMAQQLGLYFHAYNKGKTLVASKVPLPNYRADL
DERHGSTQKEIRMSTDIERRVGSLLDTSKGESSTENSTGASSQSSKNSLSAKSFVIESNV
DKDKISAELKQQEEKLKARANVQAMQSFRAKLPAFNVRTEFLNAVAKNQVLVVSGETGCG
KTTQLPQFILEEEISLLRGADCSIICTQPRRISAISVAARISSERGENLGETVGYQIRLE
TKRSARTRLLFCTTGVLLRQLVQDPNLTGVSHLLVDEIHERGMYEDFLLIILKDLLPRRP
DLRLILMSATINADLFSHYFGNAPTIHIPGLTFPVEEFFLEDVLEKTRYRIKQESDNFQG
NSRRRVKQLDSKKDPVTELFEDVDIDSHYWSYTINTRKSLEAWSSVQLDLSLVESTIEHI
CRHEGEGAILVFLTGWDEISKLLDSMKANNFLGDTRKFLVLPLHGSMPTVNQREIFDKPP
ANTRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRG
RAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQELCLNIKSLQLGTVGSFLAKALQP
PDSLSVENAIELLKTIGALDEREELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLNPALTI
AAALAYRNPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKEAKCSRTDRSYCWE
NFLSPVTLQMMDDMRKQFVDLLSDIGFVDKAKGPNAYNQYSHDMEMVCAILCAGLYPNVV
QCKRRGKRTAFYTKEVGQVDIHPASVNAGVHLFPLPYMVYSEMVKTTSIFIRDSTNISDY
ALLLFGGSLFPSKSGEGIEMLGGYLHFSASKSVLELMKKLRGELDKLLSRKIEEPRLDIT
AEGKGVVAAVVELLHSQNFKY
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgcgctgcttcacattcccatttccattcacaacaagcgttccaaccactttc
tctctcctcaaacacctcacttcttcttcattttcttcctccatttccaaacctcctctt
ctccttctccattgctctctctcaacatccatgtcctcccgccctaacttccaaggcggc
cgtcgcggaggcggcggaaatcgcggcggcggcaatcgtggtggcggtggtagaggcggt
ggtggacgtggaggcggtggtggagagcagcgatggtgggaccctgtttggcgagctcag
aagcttgcgcagaaagccgctgagtatgaagtgttggatgagaacgagtggtggaataag
atggaaggatttcagaaaggaggagagcaggagttgataattaagcgtctttttaggcgg
gaagatcaacagcttctctctgatatggcgcaacagcttggcctttacttccatgcatat
aacaaaggaaagacacttgttgcgagcaaagttcctttaccaaattatcgtgcagatcta
gatgaacgtcatggatccacgcaaaaggagatacggatgtctacagacattgagaggcgg
gttggatcactgttggatacctctaaaggtgaaagttctactgaaaattccactggtgca
tcttctcaaagctctaagaattcactgtcagcaaaaagctttgtgatagagagtaatgtt
gataaggataaaatcagtgctgaactcaagcagcaggaggagaagttaaaggcaagggca
aatgtacaagccatgcagtcattcagagcaaagctccctgctttcaatgtgagaactgaa
tttctaaacgctgttgctaaaaatcaggtcctagttgtgtcaggggagactggctgtggt
aaaacaacccagctcccacagttcattttggaagaggagatttcattgctgcgtggtgct
gattgcagcataatatgtacacaaccacgtcgtatatcagctatatctgttgctgctcgt
atatcatctgaaagaggagagaatcttggtgaaacggttggctatcaaatacgtctggag
acaaaacgttctgcacggacacggttactgttctgcacaactggagttttacttagacaa
ttggttcaggatccaaatttaactggtgtgagccatctgctagtggatgaaattcatgaa
agaggaatgtatgaggacttccttcttattatattaaaggatcttcttcctcgccgtcca
gatttacgacttattcttatgagtgctactattaatgctgacttattttcccattatttt
gggaatgcccctactattcatatcccgggactgacttttccagtcgaagagttctttttg
gaagatgttttagagaaaactcggtatcgtatcaaacaagagtctgataatttccagggc
aattcaaggcggcgagttaaacaattggattctaaaaaagatccggtaactgaattattt
gaggatgttgacattgattcacattactggagttacaccatcaatacaagaaagtctctt
gaagcctggtctagtgtgcagcttgatctgagtcttgtggaatcaacaattgagcatata
tgtcggcatgagggtgaaggggcaatacttgtatttctcactggctgggatgaaatttcc
aagttacttgacagcatgaaggcgaacaattttcttggagacacaaggaagtttcttgtt
ctccccttacatggttcaatgccaactgttaatcaacgtgaaatttttgataaaccacct
gcaaatacaaggaaaattgttcttgctacaaatattgcagagagtagcattacgattgat
gatgtagtttatgttgtcgactgcggaaaggcgaaggagactagttatgatgctttgaac
aagctagcttgcttgttgccatcatggatctcaaaagcgtcagcacatcagagacgaggt
cgtgctggtcgagtgcagcctggagtttgttataggctgtatccaaaacttgtttatgat
gcaatgcctcaatatcagttaccagaaattctccggacacctttgcaagaactttgttta
aacataaagagtttgcaacttggaactgttgggtcattcttagcaaaagcacttcagcca
ccggattctctctctgtcgaaaatgctattgaacttctgaagacaattggagctttagat
gaaagggaagagcttactcctcttggccgacatctctgcactctgcctttggaaccaaat
attgggaagatgctgctcatgggatcgatatttcaatgcctgaatccagctttgacaatt
gctgctgctcttgcttatcgtaatccatttgtcttgccaattaataggaaggaggaagct
gatgctgcaaagagatcttttgctggcgattcttgtagtgaccatatagcacttttaaaa
gcatttgaagggtggaaagaagcaaaatgcagtaggacagacagatcatattgttgggag
aacttcttgtcaccagtaactctgcaaatgatggatgatatgcggaaacagtttgtagat
ctactttcagacattggctttgtggacaaggcaaagggtcctaatgcttataatcagtat
agtcacgatatggagatggtttgcgctatcctctgtgctgggctttaccccaatgttgtt
caatgtaagagaagaggaaagaggacagcattttacactaaagaagttgggcaagttgac
attcatcctgcttctgtcaatgctggtgttcatctttttccgttgccgtatatggtttac
agtgagatggtgaagacaactagcatattcattcgcgattcaactaatatatccgattat
gctcttcttctatttggtggtagtctctttcctagtaaatctggagaaggaattgagatg
cttgggggttaccttcatttttcggcttcaaaaagtgtgttagaattgatgaagaaattg
cgaggggagcttgataaacttttgagcaggaagattgaagaaccaaggttagacatcact
gccgaggggaagggtgtggttgctgctgtggttgagttgctgcacagtcaaaacttcaaa
tactag
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