Chenopodium quinoa (quinoa): 110734249
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Entry
110734249 CDS
T05764
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110734249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110734249
03009 Ribosome biogenesis [BR:
cqi03009
]
110734249
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110734249
Spliceosome [BR:
cqi03041
]
Complex A
U2 snRNP components
U2 related factors
110734249
Complex B
110734249
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110734249
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
90S particles
Helicases
110734249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
AAA_33
AAA_30
Flavi_DEAD
AAA_7
FtsK_SpoIIIE
TsaE
NACHT
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
110734249
NCBI-ProteinID:
XP_021770014
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDDNSINKLPKANGAAAPMMMNNGIPNLSINRWNGRPYSQRFFDIL
EKRKSLPVWQQKEEFLKVLHTNQTIVLVGETGSGKTTQIPQFVLEAVELESPDKRKKMMV
GCTQPRRVAAMSVSRRVAEEMDVTLGEEVGYSIRFEDCSNSRTVLKYLTDGMLLREAMTD
PLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQDYFNGAP
LMKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKI
NKEVGNLGDQVGPVKVVPLYSTLPPAMQQKIFETAPPPTKEGGPPGRKIVVSTNIAETSL
TIDGIVFVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEK
SFHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGA
LDDEGNLTRLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQK
AADEAKARFGHIDGDHLTLLNVYHAYKQNQEDPNWCYENFINQRTLKAADNVRQQLVRIM
ARFNLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLEKTGHYLTVKDNQVVHLHPSNCLD
HKPEWVIYNEYVLTSRNFIRTVTDVRGEWLVDIAPHYYDLENFPNCEAKRVLEKLYKKRE
RDGEESKNRR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggggacagagagaaagaggaaggttagcttgttcgacgttgttgacgacaactccatt
aacaagcttcccaaagctaacggtgctgctgctccgatgatgatgaacaatggaatccct
aatctttcgattaatcgatggaatggaaggccctattctcagcgatttttcgatattctg
gagaagcgtaaatctcttcctgtttggcagcagaaagaggagtttttgaaggttcttcat
actaatcagactattgttttagtcggtgaaactggtagtggtaaaactacccagattccg
caatttgttttggaggctgtggaattagagtctcctgataaacgaaaaaagatgatggtt
ggttgtactcagccacgtagggtggcagcaatgtcagtctcacgtagagttgcagaggaa
atggatgtgactttgggagaagaagttggttacagtattcgttttgaagactgtagtaat
tcaagaacggttttgaagtatctgacagatggtatgttgttgagagaagcaatgacagat
ccacttttggagaggtataaagttataattcttgatgaagctcatgaaaggacattggca
acagatgtgctatttgggcttttgaaggaagtgttaagaaacaggccggacttaaagtta
gttgttatgagtgctactcttgaggctgagaaatttcaggattattttaatggtgctcct
cttatgaaagttcctggaaggttgcatcctgtggaaattttttacacccaggatcctgaa
agagactaccttgaggcagctattcgaaccgttgtacaaatacacatgtgtgaacctcct
ggtgatatacttgttttcctcactggagaggaggagattgaggatgcttgtcgtaaaatt
aataaagaagtgggaaatttaggtgaccaagttggacctgtgaaagttgttccattgtat
tctactcttcctcctgctatgcagcagaagatatttgaaactgctcctcctccaacgaaa
gagggaggtcctcctgggaggaaaattgtggtgtctactaacattgctgaaacatctttg
accattgatggtatagtatttgtgattgatccaggatttgctaaacagaaagtctataat
ccccgagttcgtgttgaatcactattggtttctcctatatcaaaggcaagtgcacaccag
agggctggtcgtgctggaagaacacaacctggtaaatgctttaggctatacacagagaaa
agtttccataatgatctccagccgcagacttatcctgaaattctgcggtcaaatctagca
aatactgtacttacactgaagaagcttggcattgatgatctggtacattttgactttatg
gaccccccagctccagagactctgatgcgagctttagaggtgttgaattatcttggtgca
ttggatgatgaaggtaatttgaccaggcttggagaaattatgagtgaatttcccctggat
ccccaaatgggaaagatgcttgtcgtgagtcctgaattcaactgttcaaatgaaatcctt
tcaatatcagcaatgctttcagttcccaattgctttgtgaggcctagggaggcccagaaa
gctgcagatgaagcaaaagctaggtttggacacattgatggagatcaccttacgctgttg
aacgtctatcatgcctacaagcagaatcaagaggacccaaactggtgttatgaaaatttt
atcaaccagaggacattaaaggctgcagataatgtgagacagcaacttgtgcgcattatg
gctaggttcaacctgaagttatgcagtactgatttcaacagcagggattactatgtcaac
atacggaaggcaatgctgtcaggatatttcatgcaagtggctcatctggaaaaaacagga
cactatttgacagtgaaagataaccaagtggttcacttgcatccttcaaattgcttggat
cataaaccagagtgggttatatacaatgaatacgtgttgaccagccggaatttcattcgt
actgttactgatgtccgtggagaatggcttgttgatattgcaccacactactatgacctt
gaaaacttccctaattgtgaagcaaagcgagttctggagaagctttacaagaagcgtgag
agggatggggaagagagcaagaataggaggtag
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integrated database retrieval system
