Chenopodium quinoa (quinoa): 110734283
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Entry
110734283 CDS
T05764
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110734283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110734283
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110734283
Spliceosome [BR:
cqi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110734283
Complex B
110734283
Complex C
U2 SnRNP specific factors
110734283
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-GeneID:
110734283
NCBI-ProteinID:
XP_021770057
LinkDB
All DBs
Position
Unknown
AA seq
775 aa
AA seq
DB search
MSKRKFGFEGFGINRQQTYNFERSQQQPQRLYTPPSSSRPHDHHEDTDVDNIDFDDDSNN
VSDAGNLTGNEEIDPLDAFMEGIHKEVSEAPPPKPKEKLDKYRDDDDDDEDDPMESFLRA
KKDVGLTLASDALRAGYDSDEEVYAAAKAVDAGMVEYDSDDNPVVLDKRKIEPITALDHS
EIDYEAFNKDFYEEKPSISGMSEQDVTEYRNALKIRVSGFDVPRPVKTFDDCGFPPPLMS
AITKQGYEKPTNIQCQALPIVLSGSDIIGIAKTGSGKTAAFVLPMIVHIMDQPELGKGEG
PIGVICAPTRELAHQIYLETRKFAKPYGLRVSAVYGGMSKLDQFKELKAGAEIVVATPGR
LIDLLKMKALTLKRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE
KLAREILSDPVRVSVGEVGMANEDITQFVQVLPSDAEKLPWLLEKLQGMIDEGDVLVFAS
KKASVDELESQLAQKGFKVASLHGDKDQASRMEILQKFKAGIYHVLIATDVAARGLDIKS
IKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGEMVNSLIAAGQNVS
VELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGRGGGGGGGGGRGVRGVDFGLGIGYNTE
SNNAPSQTPSRTAAVNSLRTGMMAQFKSSFVAASPDSQNQATNNSNVYANKRPAMTGFVS
GGTIGGDSNRPQATPTTNFTPAPGGSIGGQNADQKSNESSRERQRERRRPSGWDR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaaattcggcttcgaaggcttcggaatcaatcgccaacaaacctacaac
ttcgaacgatctcaacaacaacctcaacgcctctacactcctccttcttcttcgcgacct
catgaccaccacgaagataccgatgtcgacaacatcgacttcgacgacgatagcaacaac
gtttccgacgccggaaatctcaccggcaacgaagaaattgatcctttggacgcttttatg
gagggaattcataaggaagtgagtgaagcgcccccgccgaagccgaaagagaagcttgat
aagtatagagatgatgatgatgatgatgaggatgatccaatggaaagtttcttgagggca
aagaaagatgtagggttaacattggcttcggatgcgcttcgagccgggtacgattccgat
gaggaggtttacgctgctgcgaaagcggttgatgctggaatggttgagtatgattctgat
gataatccggttgtgcttgataagaggaagattgagcctattactgcattggatcatagt
gagattgattatgaggcgtttaataaggatttttatgaggagaagccttccatttctggc
atgagtgagcaggacgtcacagagtaccggaatgccttgaaaattcgtgtttctggtttt
gatgttccaaggccagttaaaacttttgacgattgtggattccctccaccactgatgagt
gcaatcacaaaacagggttatgaaaagcctaccaacatacaatgccaagctttaccaatt
gtgctgtcaggaagtgatataattggcatagcaaagactggttctggaaaaactgctgct
tttgtgcttcctatgattgtgcatataatggatcagccagagctgggcaaaggagaagga
ccaatcggagtgatatgtgcacccaccagagaattagctcatcagatatatttggaaact
agaaaatttgcaaaaccgtatgggttacgtgtgtctgcagtctatggtgggatgtccaag
cttgatcagtttaaagaactcaaggcaggagcggagattgttgttgctactcctgggaga
ctgattgatttgctgaaaatgaaggcattaacattgaagagagcaacatatctggtgctt
gatgaggcggatcgaatgtttgaccttggttttgagccacagataaggtctattgttggt
cagatcaggccagatcgtcagactttactcttctcagcaacaatgccccgaaaagtggaa
aagttggcaagagaaattctttctgatcctgtacgtgtttcagtgggggaggtaggcatg
gcaaatgaagatataactcagtttgttcaagtgcttccatcagatgcagaaaagttacct
tggctcttagaaaagctgcaaggaatgattgatgaaggtgatgttttggtatttgcttcg
aaaaaggcctctgtagatgaacttgagtcccaactagcacagaaagggttcaaagttgct
tctcttcacggtgataaagatcaggcttctcggatggagattctgcagaaatttaaggcc
gggatataccatgttcttattgctacggatgttgctgctcgaggtcttgacattaagtcg
atcaagtcagttgtcaactttgacattgcaaaagatatggatatgcatgtgcatcgcatt
ggtagaacaggtcgtgctggtgataaagacggagttgcatacactcttatcacacagaaa
gaggccaggtttgctggggaaatggtcaacagtttgatcgctgctggccagaatgtgtct
gtggaactgatggatcttgccatgaaggatggaagattcaggtctaaacgtgatgcaagg
aaaggaggtggaaagaagggaaaagggagaggaggaggacgaggaggtggtggaggagga
ggtggtggtcgaggtgttcgtggagtggattttggtttgggcattgggtataatacagaa
tccaacaatgctccctctcaaactcccagtcggactgctgcagttaattcacttaggact
ggtatgatggcacagttcaagagcagctttgtggctgcttcacctgactctcagaatcag
gcgaccaacaattcaaacgtgtatgccaacaagcgcccagctatgactggttttgtttcg
ggtggtaccataggtggggacagcaacagacctcaggcaacccctacaacaaatttcact
ccagcaccaggagggagcatcggtggtcagaatgctgatcagaagagcaatgaaagctca
agagaaaggcaaagggaaaggcgaaggccctcaggctgggatagatag
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