Chenopodium quinoa (quinoa): 110734307
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Entry
110734307 CDS
T05764
Name
(RefSeq) DNA mismatch repair protein MSH6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110734307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cqi03400
]
110734307
DNA repair and recombination proteins [BR:
cqi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110734307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
nSTAND_NTPase5
Tudor_KDM3B
Motif
Other DBs
NCBI-GeneID:
110734307
NCBI-ProteinID:
XP_021770095
LinkDB
All DBs
Position
Unknown
AA seq
1305 aa
AA seq
DB search
MAPSRKVTNGRSPLVNKQYQITSFFTKADSSLPKSKPQLSPPKSNQTPFPKSQNPNPNPN
ISPGSSPPTTPSPINAKSKSKSTPKPLLVIGSQKSTPTGVNLKGNLFGEEVVNRRIRVYW
PIDEAWYEGCVKSFDKVSGKHLVEYDDNEEEMIDLSKEEVEWIEVEGGSSVKKSRKRRLR
KVSIVVDDEEEEEGEGNVGLVEDDSSDEDWGKNVVVEEEDCLEEMDLVDEEEEKEVGSLK
RKKREVGGSGAKKGKEGSGEAAKSIKKKKVEVCVFGSKPAKPVANVQEAKSHNVVDSTTT
DALERFGIREEQKFPFLGKDRQDAKRRRPGDTDYDPRTLYLPPQFLKNLTGGQRQWWEFK
SKHMDKVLFFKQMGKFYEIFEMDAHIGVKELDLQYMRGEQPHCGFPEKNFSINVEKLARK
GYRVLVVEQTETPDQLDMRRKEEGSKDKVVKREICAVVTKGTLTEGEMLSANPEASYIMS
VNESCSLSSNKEERLYGVCVVDVTTSQVIIGQIKDDLECSTLCSLLSELRPVEIIKPAKM
LSPETERALTRYTRNPLINELLPNEEFWDADRTVREVKRFYSCINISPVPSQQKEVADVI
SSSINDESCWLPKLISELLSAESDGSLALSALGGTLYYLKQAFLDENLLRYAKFESLPCS
DYCNVFKKPYMVLDAAALENLEIFENSKNGGSSGTLYSQLNYCVTGFGKRLLKTWLARPL
YHAESIRERQDAIAGLRGNISLALEFRKELSKLPDMERLLMRLFASSEANGRNASKIVLY
EDAAKKQLQEFISALRACEVMIVACSSLGSILDKTDSKLLHHLLVPGKGLPNMSSIIKEF
RDAFDWVDANSTGRIIPLEGADAEFDSASKKIEEIESDLKRHIVEQKKLLGITSITYVTI
GKDIYLLEVPERLSGSVPRDYELRSSKKGFSRYWTPFIKKMVGELTQLQAVKESKLKCML
QDLVGRFCEHHTMWRSLVSAVAELDVLITLVIASDYYEGPTCRPSISSGININEVPQLAA
KSLGHPIIKSDSLGRGTFVPNDINIGGSDHATFILLTGPNMGGKSTLLRQICLAVILAQV
GANVPAEHFELSLVDRIFVRMGAKDHIMAGQSTFLTELSETASMLTSATRDSLVALDELG
RGTSTSDGQAIAESVLEHFVRKVQCRGMFSTHYHRLAIDYKRDPKVSLCHMACQVGKGDR
GLEEVTFLYRLTPGACPKSYGVNVARLAGIPVGVLFKAAAKSKDFEAVYGRHQERSNNNV
PDWNEKTIIFFQNLIGISSSDDSANSRIATLSQLQHQARILLEQN
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttcacgcaaggtcaccaatggcagatcaccattggtaaacaaacaataccaa
atcacctcttttttcaccaaagctgattcttctttacccaaatcaaaaccccaattatcc
cctcctaaatctaatcaaaccccatttcccaaatcacaaaaccctaaccctaatcctaat
attagtccggggtcatctcccccaactaccccttctcctattaatgcaaaatcgaagtca
aaatcgacacctaagcctttgttggtaattgggtcgcaaaaatcgactccaacgggagtg
aatttgaaggggaatttgtttggtgaagaggtggtgaatcggagaattagggtttattgg
ccgatagacgaggcgtggtacgaggggtgtgtgaagtcgtttgataaggtttctgggaag
catttggtggagtatgatgataatgaggaggaaatgattgatctttctaaggaggaggtt
gagtggattgaagttgaaggagggtcttctgttaagaagtctaggaagaggaggttgagg
aaggtgtctattgtggttgatgatgaggaagaggaggagggagaggggaatgtgggtttg
gtggaggacgattcgagcgacgaggattgggggaagaatgtggttgttgaggaggaagat
tgtttggaggagatggacttggtggatgaagaagaggaaaaggaggttgggagtttgaag
aggaagaagagagaggttggagggagcggggcgaagaagggtaaggaaggcagtggagag
gcggcgaaatcaattaagaagaagaaagttgaggtttgtgtttttggtagcaagccggcg
aaacctgttgccaatgttcaagaggcaaaatcacataatgttgttgacagcaccactact
gatgcattggagaggtttggtattcgtgaagaacagaagtttccattccttggaaaggat
cgacaagatgccaaaaggagacgtcctggtgatacagattatgatcccagaactctttat
ttgccccctcagtttcttaaaaatctgacgggtggccagagacaatggtgggagtttaaa
tcgaagcatatggataaggtccttttctttaagcagatgggaaaattctacgagattttt
gaaatggatgcacatattggcgtaaaagaacttgatttacagtacatgaggggagaacag
ccacattgtggatttcctgaaaagaatttctcaatcaacgtagagaaattagcaagaaag
ggttatcgagtccttgtagtggagcagactgaaactccagaccagcttgatatgcgccgc
aaagaagagggttcgaaagacaaggtagtcaaacgagaaatatgtgctgtagtaacaaaa
ggaacattgacggagggagagatgttgtctgcaaatccagaagcttcttacattatgtca
gtgaatgaaagttgttcactttcttcaaataaggaagaacgcctgtatggtgtgtgcgtt
gttgatgtcactacaagccaagtaattattggccagataaaggatgatttggagtgcagt
actttatgcagtcttctatccgaattaaggccagttgagattattaaacctgctaaaatg
cttagtcctgagactgaaagggctcttaccaggtatactaggaatcccctcatcaatgag
ctgcttccgaatgaggaattttgggatgctgataggactgttcgtgaagtcaagagattc
tacagttgcatcaatatttcgccggttccttcacaacaaaaggaagtagctgatgtcatc
agctccagtataaatgatgagtcatgttggctgccaaagctcataagtgagctgttgagt
gctgaaagtgatggcagtcttgcattatcagcccttggagggaccctttactacctgaaa
caggctttcttggatgaaaatttgcttagatatgcaaaatttgaatcactcccatgctcc
gattactgtaatgtctttaagaaaccttacatggtgttagatgctgctgcattggagaat
ttggaaatatttgagaacagtaagaacgggggctcctccgggacattgtactcccagctt
aattattgtgtgaccggttttgggaagaggttgcttaaaacatggctagcaaggcctctt
tatcatgctgagtcaattagggaacgacaagatgctattgcaggccttaggggaaatata
tcattggcgcttgaatttcgaaaagagctatccaagttgccagacatggagaggttgctc
atgcgcctctttgctagcagtgaagctaatgggaggaatgcaagtaagattgttctttat
gaagatgctgcaaaaaaacagcttcaagaattcatatcagcattacgtgcttgtgaagtt
atgattgtggcatgctcttctctaggttccatcctggataaaactgactctaaattgtta
catcatctgttagttcctggcaaaggtctccccaatatgagttccataataaaggaattt
agggatgcatttgattgggtggatgctaatagtacaggtcgtataattcctcttgaagga
gctgatgcagaatttgattctgccagtaaaaagattgaggagattgaatctgatttgaag
agacatatcgtggaacagaaaaaattacttggcatcacatcgattacatatgttaccatt
ggaaaggacatatacctgttagaagtacctgaaagattgagtggaagtgttcccagagac
tatgagttacggtcatccaagaagggtttctccagatactggacaccatttatcaagaag
atggtaggagagctgacacagcttcaagctgtgaaggaatccaaattaaaatgcatgttg
caagatttggtaggacgtttttgtgagcatcacacaatgtggagaagcttggtttctgct
gttgcagaactagatgtcttgatcaccttggtaattgcaagtgattactatgaaggacca
acatgccgtccaagtatttcatctgggatcaatattaatgaagtacctcaattagcagct
aaaagtctggggcatcctataatcaaaagcgattctttgggcaggggtacgtttgtaccc
aatgacattaatattggtggctcagatcatgctaccttcatcttgcttactggtcctaat
atgggtggaaaatcaactcttcttcgccaaatttgcttggctgttatcttggctcaagtt
ggagcaaatgtccctgcagaacactttgagctatcacttgttgaccggatatttgttcgt
atgggggcgaaagatcacattatggcaggacagagcacatttttaacagagctttcagaa
actgcatctatgttgacatctgctacccgtgattcacttgtggcattggatgaacttgga
cgtggcacttcaacttcagatggacaagcaattgcggaatctgtccttgaacattttgtc
cgcaaagtgcagtgtcgtggaatgttttctactcattaccaccgattagctattgactat
aaaagagatcccaaggtctctctatgtcatatggcatgtcaagtaggaaaaggtgataga
ggtttggaagaagtcacatttctttacaggctgactccaggtgcttgtcccaaaagttat
ggtgttaatgttgcacggctggctggaattcctgttggtgtactgtttaaagctgctgcc
aagtcgaaagactttgaggctgtttatggtaggcaccaagaaagatccaacaacaatgtc
ccggattggaatgaaaagaccattatattcttccaaaatctgatcggtattagttcttca
gatgattccgcaaattcaagaattgccacactcagccagcttcagcaccaagctaggatt
cttttggaacaaaattga
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