Chenopodium quinoa (quinoa): 110735396
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Entry
110735396 CDS
T05764
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110735396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110735396
03012 Translation factors [BR:
cqi03012
]
110735396
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110735396
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110735396
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110735396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
BEX
nSTAND3
T2SSE
Rad17
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
110735396
NCBI-ProteinID:
XP_021771275
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MSMRCFAFSTTSVPTTFSLLKHLTSSSISKPPLLLLHCSLSTSMSSRPNFQGGRRGGGGR
NRGGAGNRGGGGRGGGGRGGGGGEQRWWDPVWRAQKLAQKAAEYEVLDENEWWNKMEGFQ
KGGEQELIIKRLFRREDQQLLSDMAQQLGLYFHAYNKGKTLVASKVPLPNYRADLDERHG
STQKEIRMSTDIERRVGSLLDTSKGESSTXNSTGASSQTSKNSPSAKSFVKPVSVLESNV
DKDKISAELKQQEEKLKASANVQAMQSFRAKLPAFNVRTEFLKAVAKSQVLVVSGETGCG
KTTQLPQFILEEEFSLLRGADCSIICTQPRRISAISVAARISSERGENLGETVGYQIRLE
TKRSARTWLLFCTTGVLLRQLVQDPNLTGVSHLLVDEIHERGMYEDFLLIVLKDLLPRRP
DLRLILMSATINADLFSHYFGNAPTIHIPGLTFPVEEFFLEDVLEKTRYRIKQESDNFQG
NSRRRVKQLDSKKDPVTELFEDVDIDSHYRSYTINTRKSLEAWSSVQLDLSLVESTIEHI
CRHEDEGAILVFLTGWDEISKLLDSIKANNFLGDTRKFLVLPLHGSMPTVNQREIFDKPP
ANTRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRG
RAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQELCLNIKSLQLGTVGSFLAKALQP
PDSLSVENAIELLKTIGALDEREELTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPALTI
AAALAYRNPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKEAKCSRTDRSFCWE
NFLSPVTLQMMDDMRKQFVDLLSDIGFVDKAKGPNAYNQYSHDMEMVCAILCAGLYPNVV
QCKRRGKRTAFYTKEVGQIDIHPASVNAGVHLFPLPYMVYSEKVKTTSIFIRDSTNISDY
ALLLFGGSLLPSKSGEGIEMLGGYLHFSASKSVLELMKKLRGELDKLLSRKIEEPRLDIT
AEGKGVVAAVVELLHSQNFKY
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgcgctgcttcgcattctccacaacaagtgttccaaccactttctctctcctc
aaacacctcacttcttcttccatttccaaacctcctcttctccttctccattgctctctc
tcaacatccatgtcttcccgccctaacttccaaggcggccgtcgaggcggcggcggcaga
aatcgcggcggagccggcaatcgtggcggcggcggtagaggcggcggcggacggggaggc
ggtggcggagagcagcgatggtgggaccctgtttggcgagctcagaagcttgcgcagaaa
gcagctgagtatgaagtgttggatgagaatgagtggtggaataagatggaaggatttcag
aaaggaggagagcaggagttgataattaagcgtctttttaggcgggaagatcaacaactt
ctctctgatatggcgcaacagcttggtctttacttccatgcatataataaaggaaagaca
cttgttgcgagcaaagtccctttaccaaattatcgtgcagatctagatgaacgtcatgga
tcaacgcagaaggagatacggatgtctacagacattgagaggcgggttggatcattattg
gatacctctaaaggtgaaagttctactngaaattccactggtgcatcttctcaaacttct
aagaattcaccgtcagcaaaaagctttgtgaaaccagtctccgtgttagagagtaatgtt
gataaggataaaatcagtgctgaactcaagcagcaggaagagaagttgaaggcaagtgca
aatgtgcaagccatgcaatcattcagagcaaagctccctgctttcaatgtgagaactgaa
tttctaaaagctgttgctaaaagtcaggtcctagttgtgtcaggggagactggctgtggt
aaaacaacccagctcccacagttcattttagaagaggagttttcattgctgcgtggtgct
gattgcagcataatatgtacacaaccacgtcgtatatcagctatatctgttgctgctcgt
atatcatctgaaagaggagagaatcttggtgaaactgttggctatcaaatacgtctggag
acaaaacgttctgcacggacatggttattgttctgcacaacaggagttttactcagacaa
ttggttcaggatccaaatttaactggtgtgagccatctgctagtggatgaaattcatgaa
agaggaatgtatgaggacttccttcttatagtattaaaggatcttcttcctcgccgtcca
gatttacgacttattcttatgagtgctactattaatgctgacttattttcccattatttt
gggaatgcccctactattcatattccgggactgacttttccagttgaagagttctttttg
gaagatgttttagagaaaacccggtatcgtatcaaacaagaatctgataatttccagggc
aattcaaggcggcgagttaaacaattggattctaaaaaagatcctgtaactgaattattt
gaggatgttgacattgattcacattaccggagttacaccatcaatacaagaaagtctctt
gaagcctggtctagtgtgcagcttgatctgagtcttgtcgaatcaacaattgagcatata
tgtcggcatgaggatgaaggggcaatacttgtatttctcactggctgggatgaaatttcc
aagttacttgacagcattaaggcgaacaattttcttggagacacaaggaagtttcttgtt
ctccctttacatggttcaatgccaactgttaatcaacgtgaaatttttgataaaccacct
gcaaatacaaggaaaattgttcttgctacaaatattgcagagagtagcattactattgat
gatgtagtttatgttgtcgactgcggaaaggcaaaggagactagttatgatgctttgaac
aagctagcttgcttgttgccatcatggatctcaaaagcgtcagcacatcagagacgaggt
cgtgctggtcgagtgcagcctggagtttgttataggctgtatccaaaactagtttacgat
gcaatgcctcaatatcagttaccagaaattcttcggacacctttgcaagaactttgttta
aacataaagagtttgcaacttggaactgttgggtcattcttagcaaaagcacttcagcca
ccagattctctctctgttgaaaatgctattgaacttctgaagacaattggagctttagat
gaaagggaagagcttactcctcttggccgacatctctgcactctgcctttggaaccaaat
attgggaagatgctgctcatgggatcggtatttcaatgcctgaatccggctttgacaatt
gctgctgctcttgcttatcgtaatccatttgtcttgccaattaataggaaggaggaagct
gatgctgcaaagagatcttttgctggcgattcttgtagtgaccatatagcacttttaaaa
gcatttgaagggtggaaagaagcaaaatgcagtaggacagacagatcattttgttgggag
aacttcttgtcaccagtaactctgcaaatgatggatgatatgcggaaacagtttgtggat
ctactttcagacatcggctttgtggacaaggcaaagggtcctaatgcttataaccagtat
agtcatgatatggagatggtctgcgctatcctctgtgctgggctttaccctaatgttgtt
caatgtaagagaagaggaaagaggacagcattttatactaaagaagttgggcaaattgac
attcatcctgcttctgtcaatgctggtgttcatctttttccgttgccgtatatggtttac
agtgagaaggtgaagacaactagcatattcattcgtgattcaactaatatatccgattat
gctcttcttctatttggtggtagtctccttcctagtaaatctggagaaggaattgagatg
cttgggggttaccttcatttttcggcttcaaaaagtgttttagaattaatgaagaaattg
cgaggggagcttgataaacttttgagcaggaagattgaagaaccaaggttagacatcact
gctgaggggaagggtgtggttgctgctgtggttgagttgctgcacagtcaaaacttcaaa
tactag
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