Chenopodium quinoa (quinoa): 110737393
Help
Entry
110737393 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110737393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110737393
03012 Translation factors [BR:
cqi03012
]
110737393
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110737393
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110737393
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110737393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
PhoH
AAA_23
Myosin_head
ABC_tran
TsaE
Motif
Other DBs
NCBI-GeneID:
110737393
NCBI-ProteinID:
XP_021773440
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MHSKLGLLLLCGKSIYSLSNCRNSTATHALFNFLTSPQFNPKKFSQKLGILPYSYHLLSS
HRHFSGYAAEQFSDDEYECDFETNSASSSVANVDEWKWKLSMLLRNEQEQEIVSKDKRDR
RDFEQISNLARRMGLYCEVYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSVQRRVEGL
LQEHLDRTQLDSGKPSDGALECKAADADRNKTLDENPNAMLDDSVMERILQRRSLRLRNM
QRSWQESPEGRKMLEFRKSLPAFSEKERLLQAIAKNQVIVISGETGCGKTTQLPQYILES
EIESGRGAFCNIICTQPRRISAMAVAERVSAERGEPLGESVGYKVRLEGMKGKNTHLLFC
TSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN
AELFSNYFEGAPMIHIPGFTHPVRAHFLEDVLELTGYKLTSFNQIDDYGQEKVWKTQKQL
VPRKKKNQITTFVEDALKNSSFENYSPRARDSLSCWSPDCIGFNLIEAVLCHICRKEPPG
AILVFMTGWEDISCLKEQVKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNVRKIV
LATNMAEASITINDIVYVVDCGKAKETTYDALNNTPCLLPSWISKASMRQRRGRAGRVQP
GECYHLYPRCVYDAFADYQLPELLRTPLNSLCLQIKSLQIGSIAEFLSSALQPPAPLAVQ
NAIDFLKRIGALDENEHLTNLGRYLAMLPVDPKLGKMLIMGAIFHCFDPVLTIVAGLSVK
DPFLLPQDKKDLAGIAKARFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQT
LQAIHSIRKQFSFILKDAGLINEDVSSNNKLSHNQSLVRAVICSGLFPGIASVVHRETSM
SFKTKDDGQVLLYANSVNSRYQTIPYPWLIFGEKVKVNTVFIRDSTGVSDSILILFGGAL
SNGTQPGHIKMLDGYVEFFMDLNTAECYCKLKEELDKLLQKKLEDPTFDILKEGKYLMFA
VQELISGDQCDGRFVFGRESRKLKDPVDSNKFSKDGMNPKSLLQTLLMRAGHSPPKYKTK
HLKTNEFRALVEFKGMQFVGKPQRNKNLAEKDAAIEALAWLTHTDNKNENQDDNSPPDVT
DNMLKLLGKRRKSKRR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcattcaaagcttggacttcttttactctgcggaaaatcgatttattctctctccaat
tgcagaaattcaaccgcaacacatgctcttttcaattttttgacttctccacaatttaat
cctaaaaaattcagtcaaaaactcgggattttgccgtattcttatcatttgctctcttct
caccgccatttttctggttacgccgctgagcagttttccgatgatgaatacgagtgtgat
ttcgagacaaattcggcatcgtcttcggtggcaaatgttgatgagtggaaatggaaactt
agtatgttgttacgcaatgaacaagagcaagagattgtatcgaaagacaaacgagatcgt
agagattttgagcagatatcaaatcttgctagaaggatgggactttactgtgaggtatat
gggaaagtggttgttgcaagcaaggttcctcttcccaattatcggccagaccttgatgat
aaacggccgcaaagagaggtggcaattccattaagtgtacagaggagggtggaaggttta
cttcaggaacatcttgataggacgcagttagattccggaaagcctagtgatggtgcactg
gaatgtaaggctgctgatgccgacaggaacaaaactttggatgagaatccaaatgctatg
ttggatgattctgttatggaaaggattcttcagagaaggagtttgcgtttgcgtaatatg
cagagatcttggcaggaatctcctgaaggtagaaaaatgttggaattcaggaaatcactg
cctgcattcagtgaaaaggagaggctgcttcaagcaattgcaaagaatcaagtaattgtt
atatctggtgagactggatgcggtaagaccacccaacttccacagtatatattagaatct
gagatagagtctggccgcggtgccttctgtaacataatctgcacgcaaccccgaagaata
tctgctatggctgtagctgaaagagtatcagccgagagaggagaacctcttggtgaatct
gttggctataaagtccgattagaaggaatgaaagggaaaaatacccacctacttttttgt
accagtggtatattgctgcggcgcttgctaagtgatcgaaacttgaatggtgttacccat
gtctttgtagatgaaattcatgagagaggaatgaatgaagactttctattgatcgtgtta
aaagatcttctccctagacgtcgggatttgagattgattctgatgagtgcaacattgaat
gccgagttgttttccaattacttcgaaggagccccaatgattcacataccgggattcact
catcctgtgagagctcatttcttagaagatgtactggaattgacaggatacaaattgaca
tcattcaaccaaattgatgattatggacaagaaaaagtctggaaaacacagaaacaattg
gttcctaggaagaaaaagaatcagattactacttttgttgaggatgctttgaaaaactca
agctttgaaaattacagtcctcgtgcacgggattctctgtcttgttggtcaccggattgt
attggatttaatctcattgaagccgtcttgtgtcatatatgtcgaaaggaaccgcctggt
gctattttggtattcatgacaggctgggaagatattagttgcttgaaggagcaggttaaa
gcccaccctttgcttggagacccgaacagggttttgctacttacctgtcatggttcaatg
gctacatctgaacagaaactaatatttgagaggccacccccaaatgtgcgtaaaatagtt
ttggctacaaatatggcagaggctagcattacaatcaatgacatagtctatgttgttgat
tgcgggaaagctaaagagaccacttatgatgctctgaataacactccttgtctacttcct
tcttggatatcaaaggcttctatgcgtcaacgtaggggacgagctggtcgtgtgcagcca
ggagaatgctatcatttgtatcccagatgcgtatatgatgcttttgctgactaccaactc
cctgagttgttgagaactccgttaaattctctctgtctgcaaattaaaagtttacaaatt
ggcagcattgcagaatttttgtcatcagcattacagccaccagcaccattggcagtccaa
aatgctattgattttctgaaaaggattggagctttggatgaaaatgagcatcttacaaat
ctcgggaggtatttggcaatgctgccagtggatcctaaacttggaaagatgcttataatg
ggcgccatcttccactgctttgatcctgtcctaacaatagtagcaggtcttagtgttaag
gatccttttcttttacctcaagacaaaaaggatctagctgggattgcaaaggccaggttt
tctgctaaggattacagtgaccatatggctctcgttcgtgcatatgaaggatggaaagat
gcagagcgagagggatcagcttatgagtactgctggaggaatttcctctctgcccaaact
cttcaggcaatccattctattcggaagcagtttagtttcattttaaaagacgctggccta
ataaatgaagatgtgagctcaaataataagctgagtcataatcagtcattggtccgcgca
gtcatatgttctggcctgtttcctggcatagcatctgttgtgcacagagaaacatcaatg
tcatttaagactaaggatgatgggcaagtcttactctatgcgaattcagtgaattcacgg
taccagacaattccttatccatggctgatttttggagaaaaagtaaaagtcaacacagtt
ttcatacgtgactcgacaggtgtctctgattctatattgatcctctttggtggtgctctt
agcaatgggacacagcctggacatataaaaatgttggatggctatgttgaatttttcatg
gatctgaacacagccgaatgctactgcaagctgaaggaagagcttgataagcttctacaa
aaaaagcttgaagatccgactttcgacatcttaaaagaaggaaagtacctaatgtttgct
gtccaagaactaatatcaggagatcaatgtgacgggagatttgtgtttggtcgtgaaagc
aggaaacttaaggatcctgtagacagcaataaattctcgaaagatggaatgaacccaaag
agcttgctgcagactctattgatgagagctggacattctcctcctaaatacaaaactaaa
cacctgaaaaccaatgagttcagggcactggtggaattcaaggggatgcagtttgttgga
aagccccagagaaacaagaatcttgcagaaaaggatgctgctatagaagctttggcgtgg
ttgactcatactgacaacaaaaacgagaaccaggatgataattccccaccagatgtcact
gataatatgttgaaacttcttgggaaacgtaggaaatctaagcgccgttga
DBGET
integrated database retrieval system
