Chenopodium quinoa (quinoa): 110738809
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Entry
110738809 CDS
T05764
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110738809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110738809
03041 Spliceosome [BR:
cqi03041
]
110738809
03036 Chromosome and associated proteins [BR:
cqi03036
]
110738809
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110738809
Spliceosome [BR:
cqi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110738809
Complex B
110738809
Complex C
U2 SnRNP specific factors
110738809
Chromosome and associated proteins [BR:
cqi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110738809
TFTC complex
110738809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Lactonase
Motif
Other DBs
NCBI-GeneID:
110738809
NCBI-ProteinID:
XP_021774941
LinkDB
All DBs
Position
Unknown
AA seq
1208 aa
AA seq
DB search
MILYSLTLQKTTGITSAISGNFSGDKNPEIAVSRGKLLDLLRIDDNGKLHTLLSVEIFGI
IRSLTQFRLTGSHKDYIVVGSDSGRIVILEYNKITNSFDKIHQETFGKSGCRRVVPGQFS
GVDPKGRAAMVGACEKQKFVYVLNRDSSARLTISSPIEAHKSCMVTYAICGVDCGFDNPV
FAAIEMDYSGVDKDCTGQAAAEAQKHLTFYELDLGLNHVSRKWSEPIDNGANMLVAVPGG
GDGPGGVLVCAENFVIYKNQGYPDVRCLTPRRVDLPAERGVLIVSSVKHKSMPFFLLQSE
YGDVFKVTLECGNEGVSELKIKYFDTIPVTCSMCVIKPGYLFAASEFGDHALYQFLDIGD
EPDVESSSARMTELETEEGFRPVFFQPRRLKNLVKVDIGHSLMPIMDMKVVNLFEEETPQ
IYALCGQGPRSSLRILRPGLEITEMATSSLPGVPNGVWTIKKNVNDEFDAYVVVSFTTAT
LVLSIGETVEEVSNSGFLDTTPSLAVVLMGDDSLIQFYPSGIRNIREDGRINEWSTPGKK
KIVKVGYNSHQAVIALSEGDLIYFEMDITGKLMEVEKCEMQGDVACLDIAPVPAGRERSR
FLAVGTYDNLIRIMSLDPNDCMQMLSMQSVFSPPESLLFLEVQASTGTEDGAGHHANLFL
NAGLQNGMLCRTVVDMVTGQLSDIHSRFIGLKAPKLISITIRGQHAVLCLSSQPWLGYIY
QGQFLLRRLTSNTLKYAASFSSDQCAEGVIAVAADSLKVFTVERLGETFSQTIIPLRYTP
RKFVLHPKQNLLVIIESDQRALTAEEREAARKECFRTGMDDNGNVEMENAHEDDDSQVSD
EQYGYPKLEKAKWVSCIRVLDPRTEETICCLELQDNEAAFSICTVNFYDKDYGTLLAVGT
AKSLQFSPIRSFDAAYIHIYQFVDGEKLELLHKTQVDDVPLALSQFQGRLLAGIGSVLRL
YDLGMKRLLRKCENKMFPSTIISIHTYGGRIYIGDMQESFHYCYYRRDMNELYIAADDFY
PRWLIASQHIDFDTMAGADKFGNVFFVQLPQDISSEIDEDSTGRKKSKKKSMLNGDPKKV
EEIIQFHVGDVVSSLQKASLAPGGRECIIYGTMMGSVGSFLPIASRDDADFFSHLEMHMR
QEHPPLCGRDHMAYRSAYLPVKVNLLHPDSPLILALSAVVFHVVDLIFSFYLTWSSGKDL
DGGPLSSK
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgattctttacagcttaaccctccaaaaaaccaccggaattacttccgcaatctccggc
aacttctccggcgacaaaaacccagaaatcgccgtttctcgtggcaaactcctcgacctt
cttcgcattgatgataatggtaaactccatactctactttctgtcgaaattttcggaatt
atacgttctttgactcaatttcggcttactgggtctcataaagactacattgtagtgggt
tctgattctggtcgtattgtgatcttagaatacaataaaatcaccaattcttttgataaa
attcaccaggaaacttttgggaaatcgggttgtcgtcgggttgttccgggtcagttttcg
ggtgttgatccgaaagggagggcggcaatggtaggagcttgtgaaaaacagaagtttgtg
tatgttttgaacagggattctagtgctagattgacaatttcatctcctattgaggctcat
aagtcttgtatggtaacttatgctatttgtggggttgattgtgggtttgataacccggtt
ttcgctgcgattgagatggattatagcggggttgataaggattgtacagggcaggctgca
gccgaggctcagaaacatttgacattctatgaacttgatcttggtcttaaccatgtttca
agaaaatggtctgaacctattgataatggggctaatatgcttgttgcggtgcctgggggc
ggggatgggccgggtggggtgttagtgtgtgctgagaattttgtgatttataagaatcaa
gggtatccggatgttaggtgtttgactcctaggagggtggatttgcctgcagaacgcggg
gttttgatagtgtcttctgtaaagcataagtctatgccgttctttttgctgcaatcggag
tatggtgatgtatttaaggtcaccttggagtgtgggaatgagggtgtttcggagttgaag
attaagtattttgatacgattcctgtaacgtgttctatgtgtgttataaagcctggttat
ctgtttgctgcttctgaatttggtgatcatgctttgtatcagtttctggacataggagat
gaacctgatgtagagtcttcctctgctaggatgacagaattagagactgaggaaggtttt
cgaccagtgtttttccaacctaggaggctcaagaacctagtaaaagttgatataggtcac
agtttaatgccaataatggatatgaaagtggttaatctttttgaggaagaaactccacag
atatatgctctttgtggtcaaggtcctcgttcatctttaaggattctgaggcctggtttg
gaaattacggaaatggctacctcgtcacttccaggtgtgccaaatggagtttggacaatc
aagaaaaatgtcaatgatgaatttgatgcttatgttgtagtctcctttactactgctact
cttgtactttcaattggtgagacagttgaagaagttagtaatagtggatttttggatact
actccttctcttgctgtagttttgatgggtgatgactctcttatccaattctatcctagt
ggtattaggaacattagggaagatgggcgcattaacgagtggagtaccccaggaaaaaag
aaaattgttaaggtcgggtacaacagtcatcaagctgtcattgcattgagtgagggagac
ctcatttactttgagatggatattactggtaagttaatggaagtggagaaatgcgaaatg
caaggagatgtggcgtgcttagacattgccccagttccagcaggaagggaaaggtcccgc
ttccttgctgttggaacttatgataatcttattcgcataatgtcattggatccaaacgac
tgtatgcaaatgctgagtatgcaaagtgttttctcgccccctgagtctcttctattcctc
gaggttcaagcatcgacagggaccgaggatggtgctggtcatcatgccaatcttttccta
aatgctggtttgcagaatggtatgctgtgtagaacagttgtggacatggtaactggtcaa
ctttctgatattcattcccggtttataggacttaaagccccaaaacttatttcaataact
attagaggtcagcatgctgtactatgcttatcaagccagccttggctcggatacatttat
cagggacaatttctcttaagacgtctgacaagcaacactcttaaatatgctgcctctttt
tcatctgatcaatgtgcagagggtgtaattgctgttgctgcagattcacttaaggtgttt
actgttgagaggcttggtgaaacattcagtcaaactataatccctttaagatacacacct
aggaaatttgtgcttcatcccaagcaaaatcttctggtgatcattgagagtgatcaacga
gcattaaccgctgaagaacgtgaagctgcacgaaaggaatgcttcaggactggaatggat
gataatggtaatgttgaaatggaaaatgctcatgaagatgatgacagtcaggtatctgat
gagcagtatggttatccaaagctagagaaagcaaaatgggtttcgtgcataagagtcctc
gatccaagaacagaggaaacgatatgttgcctggagcttcaggataatgaggctgcattt
agcatttgtactgttaatttctatgacaaggattatgggactttactcgcagtaggaaca
gctaagtcgctccaattctcccccattagatcatttgatgcagcatatattcacatttat
caatttgttgatggtgaaaaactggagcttttgcacaagactcaagtcgatgatgtcccg
ttggctcttagccagtttcagggaagattacttgcagggattggatcagtccttaggctt
tatgacttaggcatgaagagactgctcagaaaatgtgagaacaagatgtttcctagcaca
attatttctatacacacctatggtggtcgtatttatataggtgacatgcaggagtcattc
cattattgctattatagacgggacatgaacgagctctacatagctgccgatgatttttat
cctagatggcttattgcatcacagcatatagattttgatacaatggcaggtgctgacaag
tttggaaatgtattctttgttcagcttccacaagacatctccagtgagattgatgaggat
tcaactggtaggaaaaaatctaaaaagaagagtatgctcaatggagaccctaaaaaagtg
gaggagataatccagtttcatgttggcgatgtagtatcaagtttgcagaaggcgtctcta
gcccctggtggcagagaatgcattatttatggtactatgatgggaagcgtgggatcattt
cttcctattgcctctcgcgatgatgctgacttcttttctcacttggagatgcatatgagg
caagagcatcctcctttgtgtggcagagatcatatggcctacagatctgcatatcttcct
gttaaggttaatttgttacatcctgattctcctcttattttagccttatctgctgttgtt
tttcatgtagttgatctgatcttttctttctatttgacttggtctagcgggaaggactta
gatggcggaccacttagcagcaagtga
DBGET
integrated database retrieval system
