Chenopodium quinoa (quinoa): 110739113
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Entry
110739113 CDS
T05764
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110739113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110739113
Enzymes [BR:
cqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110739113
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110739113
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110739113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
110739113
NCBI-ProteinID:
XP_021775259
LinkDB
All DBs
Position
Unknown
AA seq
573 aa
AA seq
DB search
MNFQTLQEIRCESIPISSGSDDPKNALFFHRFPEQGTDSVDHADIHYCSIHSNDVATVQC
IECVNYGLPVKHSYHCSNKCFLDAWKNHYLHHYNANVSKSCNEDTKARGTLNRCNSWPPG
DMVSWFDEKIEVVIPTGRMWVNKLGPSNALIPSADGIGFSFKLQSEAAVCAEETLVTDTT
IQKLNFSSRSLIWLPDSLNTEKHDFTKKVSKVGSFKVLTYNILSDIYVYVDKYPYCPEWA
LTWEYRRKNLLCELINYNADILCLQEVQSDHFENFFKPELESFGYFVAYKKKTKEVYTGS
GYTIDGCATFYRNDIFKEVMSYELEYSKSALSLMEKLELSLRDHARVRLIKDNIALAVIL
EVVGNSAESAASSRLCVVNTHIYAGKGFPDVKLLQVSDLVNEIEKTIDPKMPLFICGDMN
SFPGSDPYILLTKHEVDIACAEAPDPLCIFQHLKLHHSMKLASAYASTFPKPVNDIKRRR
MKMKHSKTGEPLFTSLTSFYGSTLDYIFYTVDSLEVEGLLELPDFESVGRALPSPLWSSD
HIALMGSFRITRPFLVKLQGAYDETVLEREEEN
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaattttcaaactttacaagagatccgctgtgaatcgataccaatttcttctggttct
gatgatcccaaaaatgctcttttctttcatcggtttccagaacaaggtactgattccgtt
gaccacgctgacatacattattgttctatacacagcaatgatgttgcaactgtacagtgt
atagaatgtgttaattatggactgcctgtcaaacacagttatcactgctcaaacaagtgc
ttcctagatgcatggaagaaccattatttgcatcattataatgcaaatgttagcaaatct
tgtaatgaggatactaaagcacggggaactctaaatagatgtaattcttggccacctggt
gatatggtgtcatggtttgatgaaaagatagaagtggttataccaacagggaggatgtgg
gttaacaagttgggcccttcaaatgctttaataccatcagctgatggtattggctttagt
tttaagctccaatctgaagctgcagtgtgtgcagaagagaccctcgtgacagacactacc
attcagaagctaaatttctcgtctcgttctcttatttggctaccagattcactaaatact
gagaagcatgactttactaaaaaggtttctaaagttggcagttttaaggttctaacttat
aatattttgtccgacatatatgtttatgtggacaaatatccttactgtcctgaatgggct
ctaacatgggaataccgccggaaaaatctgctttgtgaattgataaactataatgcagat
attttgtgcctgcaagaggttcagagtgatcactttgagaacttcttcaagccagagcta
gaaagttttggttattttgttgcctacaagaaaaagactaaagaggtatacacaggtagt
ggttatacaattgatggatgtgccacgttttaccgcaatgacatatttaaggaggttatg
tcctatgagcttgagtacagtaagtctgcattgtcactgatggaaaaactggaactgagc
ttgagggatcatgctagagttcgactgattaaggacaatatagctcttgctgtcatattg
gaggtggtgggcaactctgctgagagtgccgcatcttccagactctgtgtggtcaatact
cacatatatgctggtaagggattcccagatgtgaagttacttcaggtttctgatcttgtc
aatgagatagaaaagactattgacccaaaaatgcctctctttatatgtggggatatgaac
tcttttcctggaagtgatccttacattctgctcacaaagcatgaggtggatattgcatgt
gcagaggcacctgatccactatgtatatttcagcatctcaaacttcaccattcaatgaaa
ttggccagtgcatatgcttcaacatttcccaagcctgtcaatgatatcaaaagaagaagg
atgaaaatgaagcattctaaaacaggggagcctcttttcaccagtttaacatctttctat
ggtagcaccttggattatatcttttacacagtggatagcttggaagttgaagggctcttg
gagctccctgactttgagagtgtgggaagagcgcttccctcccctttgtggtcgtcagac
catattgcactcatgggaagctttcgaattactagaccattcttggtgaaattgcaaggt
gcatatgatgagactgttttagagagagaagaagaaaactga
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