KEGG   Chenopodium quinoa (quinoa): 110739224
Entry
110739224         CDS       T05764                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03018  RNA degradation
cqi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110739224
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110739224
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cqi03019]
    110739224
   03041 Spliceosome [BR:cqi03041]
    110739224
Messenger RNA biogenesis [BR:cqi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110739224
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110739224
Spliceosome [BR:cqi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110739224
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 110739224
NCBI-ProteinID: XP_021775372
LinkDB
Position
Unknown
AA seq 144 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQLKGIGRGMDDGG
KGAGGRGRGGPGGKPGGKVGGRGR
NT seq 435 nt   +upstreamnt  +downstreamnt
atgcttcctctatcattattgaagactgcgcaaggccaccctatgttggtggaattgaag
aatggggagacatataatgggcatttggttaattgtgatacatggatgaatattcatctt
cgtgaagtcatctgtacctctaaggatggagataggttttggagaatgcctgaatgttac
atccgagggaatactatcaagtatttacgagtgcctgatgaggtcattgataaagtccag
gaggagaagagccgcacagataggaagcctcctggtgtagggcgtgggagaggaagaggt
agagaagatggtcctggccggcagttaaaaggcattggacgcggtatggatgatggaggt
aaaggtgctggaggcagaggtcggggtggtcctggtgggaagcctggtgggaaagttgga
ggccgtggtagatga

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