Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ004115
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Entry
CpipJ_CPIJ004115 CDS
T01079
Name
(GenBank) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03440
Homologous recombination
cqu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CpipJ_CPIJ004115
03450 Non-homologous end-joining
CpipJ_CPIJ004115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cqu03032
]
CpipJ_CPIJ004115
03400 DNA repair and recombination proteins [BR:
cqu03400
]
CpipJ_CPIJ004115
DNA replication proteins [BR:
cqu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
CpipJ_CPIJ004115
DNA repair and recombination proteins [BR:
cqu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
CpipJ_CPIJ004115
BRCA1-C complex
CpipJ_CPIJ004115
NHEJ (non-homologous end-joining)
MRX complex
CpipJ_CPIJ004115
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_15
Rad50_zn_hook
SbcC_Walker_B
AAA_21
SMC_N
Fez1
NNH1
AAA_29
OmpH
AAA_22
ABC_tran
DUF2594
AAA_16
Zf_2nd_IFT121
Motif
Other DBs
NCBI-ProteinID:
EDS41690
UniProt:
B0WAP9
LinkDB
All DBs
AA seq
1292 aa
AA seq
DB search
MSTICKLEIRGIRSFGVESEDVQKIKFQSPLTLIVGQNGCGKTTIIECLKYGLTGEVPPG
TDRGKAFVHDPKIFNTVESLGQVKLMVKDFTGNRVTATRSMKVSHKGNTKLPKFETLDSA
VTIEDGATGEKKTLSRPRVADINNDMADAMGVSKAIINNVIFCHQEDSNWPLEEPKELKK
KFDAIFETTEYNKVIEKLIKISKEYNDRQKEKAGDLKLLENIKSQAEMKQLQAEKAERKK
GEMRKEVDGLEGSLKPIHERMEQIARIERDYSKLKQQEIEFKSKIHTKEDQQNNLRSKIR
TLFSGSLAELEQEIRSFQESMGGKRSELRDAESDLASRKSQEKSLQSKLQEMESRRVHLI
AKRQQEQDLGGDRAGKIVELCGRLKLPASGDYEGSAVDVESALAAIKHGIRSEESQVQAM
AKGHDEADQAAQKAIDRLREDKAKLESDVRMKGQMVADFAREKAKTQTEIAAIERSAETL
KKIVGEIEKLEREYETQKANSNVDGMKRTLVEKKAKREELQVKLDKVEEQISALDAIAAK
ATELGLKEQQLNGREAEFRRVRNKHSDNLKRLFPSKTIESNFKRAVQDLYDGLQRQIKQL
NESTRAAQAIVTEMETTRRSQKRDLDRLERELTENREKIYAACQGQPYEEVLSKLKEKIT
RNNLEHGEQRSAEILYRKYISRIEDDSCCPLCHKEMAGSDAQDISTELSDEIRRLPEKIE
MLEKQLKSDQTRYDRLLALQPYSERVEKQTIEIPKLKQQLQETEQRLTQASSDLEEYQMA
VLEPNSSVALINSIHGDMSILDESARDLHRMRKGVAELRQELADKTPGGGSAVSLDDMKL
EREVLRGELRAERNSIDEMQNRIDLETERLNGLHQRFNQMKEKKIQLQESVQSLDTKKAK
EVELGEKIVACKSEMEDAERRLGPVRASLAKEEEAKVKAKGENRVKLGKAQSELEGLKRM
EGEIVRLGRELDQLARLNLTDEIAKMKRKLQEVTDDIKKVAASIEEKSTKIDTLKKEISN
QDLIERDFLDNRDLKKLTAETAVLQEKLDTLLRSIGDLDAPNVVQERNKLLEQRDSIQAK
RSEITGQIAELENQLKALRKELDRPEFRNAVANFHKTFAESVVLKKIISDILKYRNALEW
ALMKYHAEKMEQINRSIYSLWRDIYRGNDIDYIRIKTEDESRETKAVEKRRQYNYRVVQA
KNDVEIDMRGRCSAGQKVLASLIIRMALAETFSNNCGVMALDEPTTNLDRENIASLCESL
RRIVTEREGGNFLLIIITHDEEFVTKLEKFDT
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaatttgcaagctggaaattcgcggaatccgcagcttcggcgtcgaaagcgag
gatgttcagaaaataaaattccaatctccgctgaccctgatcgtgggtcaaaacggttgc
ggcaaaaccaccatcatcgagtgcctgaagtacggcctcaccggcgaagtcccgccggga
accgatcgcggcaaggcgttcgtgcacgacccgaagatcttcaacaccgtcgaatcgctc
ggccaggtcaaactgatggtgaaggactttacggggaaccgcgtgacggcgacccgctcg
atgaaggtctcccacaagggcaataccaagctgcccaagttcgagacgctggattcggcg
gtcacgatcgaggacggtgcgacaggggagaaaaagacgctgtcaaggccgcgcgtcgcg
gacattaacaacgacatggcggacgcgatgggcgtttcgaaggcgatcatcaacaacgtg
atcttctgccaccaggaggactcgaactggccgctggaggagccgaaggagttgaagaag
aagtttgacgcgattttcgagacgaccgagtataataaggtgattgagaagttgatcaag
atctcgaaggagtacaacgatcggcagaaggagaaggcgggggatttgaagctgctggag
aatatcaagagccaggcggagatgaagcagctgcaggcggagaaggccgaacggaagaag
ggcgagatgcggaaggaagtggacgggttggaggggtcgttgaagccgattcatgagcgg
atggagcagattgcgcggattgagcgggattattcgaagctgaagcagcaggagattgag
tttaagtcgaaaatccacaccaaagaggaccaacagaacaaccttcgctcgaagattcgc
accctgttcagcggctcgctggccgagctggagcaggagattcgttcgttccaggagtcg
atgggcggcaagcggtcggagttgcgcgacgccgaatcggatctcgcctcgcgcaaatcc
caggaaaagtcgctccaatccaagcttcaggagatggagtcccgccgggttcatctgatt
gcgaaacgtcagcaggagcaggacttgggcggcgatcgggcggggaagattgtggagctt
tgtggccgattgaagctgccggcgagcggggattacgagggttcggcggttgacgtggag
tcggcgctggcggccatcaagcacggcattcggtcggaggagtcgcaggtgcaggcgatg
gccaaggggcacgacgaggcggatcaggcggcgcagaaagcgatcgatcggctgcgagag
gacaaggcgaaactggagtcggacgtgcgcatgaagggccagatggtggcggatttcgca
cgggagaaggccaagacgcaaacggagattgcggcgatcgaacgttcggcggagacgctg
aagaagatcgtcggggagattgagaagttggagcgggagtatgaaacgcagaaggcgaac
tcgaacgtggacgggatgaagcgaacgctggtggagaagaaggccaaacgggaggagctg
caggtcaagttggacaaggttgaggagcagatttcggcgctggacgcgatcgcggccaag
gcgaccgagttgggattgaaggagcagcagctgaacggaagggaggccgagttccggcgt
gttcgcaacaagcactcggacaatctgaagcgactcttccccagcaagaccatcgagagc
aacttcaagcgagcggttcaggacctgtacgatggcctgcagcggcagatcaaacagcta
aacgagtcaacgcgtgccgcgcaagcgatcgtcacggagatggaaacgacgcggcgttcg
cagaagcgcgacctagaccggctcgagcgggagctgaccgagaaccgggagaagatctac
gccgcctgccagggtcaaccgtacgaggaagtgctgtccaagttgaaggagaagatcacc
cggaacaacctggagcacggcgagcagcgttccgcggagattctataccggaagtacatc
tcacgcatcgaggacgacagctgctgtccgttgtgccacaaggagatggccggctcggac
gcacaggacatcagcacggagctgtccgacgagatccggcggctgccggaaaagattgag
atgttggagaagcagctgaagtcggaccagacgcggtacgatcgtctgctagccctccaa
ccgtactcggaacgggtcgaaaagcagacgatcgagattcctaagctcaagcagcaactt
caggaaacggaacaacgtctcacccaggcgtcctccgaccttgaggagtaccaaatggcc
gttctcgagccgaactcgagcgttgcgctgatcaactcgatccacggcgacatgagcatt
ctggacgagtcggcccgcgacctacaccggatgcgcaagggcgtggccgagctgcgccag
gagttggcagacaaaaccccaggcggcggttccgcggtttccctagacgacatgaagctg
gagcgggaagtgctgcggggagagctgcgtgccgagcggaactcgatcgacgagatgcag
aaccgaatcgacttggagacggaacggctcaacggactgcaccagcgcttcaaccagatg
aaggagaagaagatccagctgcaggagtcggtgcagtcgctggacactaagaaggcgaag
gaggtcgagttgggcgagaagattgtggcctgcaagagcgagatggaagatgcggaacgc
cggctgggaccggttcgggcgagtctggccaaagaggaggaagccaaggtgaaggctaaa
ggcgagaaccgcgtcaaactgggcaaagctcagtccgagttggagggactgaagcgaatg
gagggcgaaattgtgcgacttggacgggagttggatcagctggccaggttgaacctcaca
gacgaaatcgccaaaatgaagcgcaagctgcaggaagtcaccgacgacatcaagaaggtc
gccgcgagcatcgaagaaaaatccaccaaaatcgacaccctcaagaaggaaatctccaac
caagacctcatcgagcgtgacttcctcgacaatcgcgacctgaagaaactcaccgcagaa
accgcggtcctccaagaaaagctcgacaccctgctccgcagcatcggcgatctggacgcc
ccgaacgtggtccaggaacgcaacaaactgctcgaacagcgcgactccatccaggccaaa
cgcagcgaaatcaccggccaaatcgccgaactcgaaaaccaactcaaagccctccgcaaa
gagctcgaccggcccgagttccgcaacgccgtcgccaacttccacaaaacgttcgccgaa
tcggtcgtcctgaaaaaaatcatctccgacatcctcaagtaccgcaacgcgctcgagtgg
gccctcatgaagtaccacgcggaaaagatggagcaaatcaaccggtcgatctactcgctc
tggcgggacatttaccgcggcaacgacatcgactacatccgcatcaaaacggaggacgaa
tcgcgcgaaaccaaagccgtcgagaaacggcgccagtacaactaccgggtcgtgcaggcg
aagaacgacgtcgagatcgacatgcgggggcggtgcagtgccggccagaaggtgctcgcg
tcgctcatcatccggatggcgctggccgagacgttcagcaacaattgtggcgtgatggcg
ctggacgagccgacgacgaatttggaccgggagaacattgcgtcgctgtgcgagagcttg
aggcggatcgtgacggagcgggagggcgggaatttcctgctcattatcatcacccacgac
gaggagtttgtgaccaagctggagaagtttgatacgtaa
DBGET
integrated database retrieval system
