Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ005737
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Entry
CpipJ_CPIJ005737 CDS
T01079
Name
(GenBank) ubiquitin specific protease 52
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CpipJ_CPIJ005737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqu03019
]
CpipJ_CPIJ005737
Enzymes [BR:
cqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CpipJ_CPIJ005737
Messenger RNA biogenesis [BR:
cqu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CpipJ_CPIJ005737
mRNA degradation factors
3'-5' decay
Pan complex
CpipJ_CPIJ005737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
WD40_CDC20-Fz
Motif
Other DBs
NCBI-ProteinID:
EDS45743
UniProt:
B0WEM6
LinkDB
All DBs
AA seq
1267 aa
AA seq
DB search
MDYVYMSGDPGNRAEDIITLTMYDNPEIDYGTFNIGFGEPELMEHGMILADGGDRFGVSA
MAFDSREELVWMGNQGGHVTSYCGGTMQKYTSFQVHSNEMVRQIFTIDSGILALTSTTLR
HQIRRGIPKFTYRSEKAVDMVCMIEHQPNRNRMLLGGHQSELIDFDVATYSEVGSVPAGQ
NGCAILRLHSRYLCEGDPFGKITLRDPNSLSAEHELLTHSGSLSDFDVQGNYLISCGFSG
RQGNLAIDRFLMVYDMRMLRLVSPIQCLVEPQLMRFLPSHTDRLAVVSPLGQLQLVDTVE
LSEPRVCMFQINTSGSQCLTFDISSSSQAMAFGDQSGHINLVAAVKINTPALQFNPFSRE
TEFADTVEPLPMVSITDKNFPLSSILLPHLTTGTRWLSDWPEFLNSYEYLKPKAIPSEIN
STMKMQGPIGYAPNPKTSLRNQIPYKMDKSSASNTNATPVSSSQKGTTEQGMKLVPRRYR
KVEVKYSKLGFEEFDFESYNQTGFVGLEANLPNAYCNAMLQSLYFIVPLRKAILSHCCSK
EFCLACELGFLFHMLDLGFSNQPCQASNFLRSFRTVPEAAALGLILSSDRSNNASLNLCS
LIQNWNRFILHQMHYELLEAIKKNEATTGIPQDCQEMLDSEVQQYNSQNEKFQFLEASND
SDPATTTPESPDPVPSPGVGGGTAQNKETDTEISRLFGTQQKTIQRCLKCNVERVKKNIL
LVCNMLYPTGSGTGSAPQRHIEGTFASILKNSLTVEKTTPAWCEKCNKFTPTNQKSRVAD
LPEILSINCGLETDKELEYLKRQMVRSSAQVTGVCAGGAGTGASTATTEGGDTRNGNGKM
CRYGMNCSRVDCHFSHPRKSSPIVITSASQVQPKSWFPLSFRMALDEQDNLEVGSLKGAS
SSVSYSDDNESEQEAKPFRRSKRYSLSAAVCYINDGAQRNLVALIHVPKSYHDLKQNRGG
ESSTGISGVDFTDGSWYIFNDFSISPVSVQEAVWFTLDWKVPCVLFYTSTTLKNEEDENK
DSLNHPTPFTNDLFFADQNTDEIADKNFKPLTPDEIFQAGDLVAMDAEFVTLNPEESEIR
SDGKMSTVKPSHMSVARITCIRGQGKDEAVPFVDDYISTQEQVVDYLTKFSGIKPGDLDA
NFSNKRLTTLKNSYQKLRYLVDSGVIFVGHGLKNDFRVINIIVPPEQIVDTVHLFHLPHH
RMVSLRFLAWQFLGIKIQSETHDSVEDARTALQLYKHYLKLNAKDEFTMALSQLYETGKK
LQWKVPD
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggattacgtttacatgagcggcgatccggggaaccgggccgaggacattatcacgctg
acaatgtacgacaatccggagattgattacggcacgttcaacattgggtttggggagccg
gagctgatggaacatgggatgatactggcggacggtggggatcgattcggggtgtctgcg
atggcgtttgattcgcgcgaggagctcgtgtggatggggaaccagggtggccacgtaaca
tcgtactgcggtggaacgatgcaaaagtacacttcgttccaggtgcactcaaatgaaatg
gttcggcagatatttacgattgattctgggattttggcgttgaccagcaccacgctgaga
catcagattcgacgtggcattccgaagtttacctatcggtcggagaaggcggtcgatatg
gtgtgtatgattgaacatcagccgaataggaacagaatgcttctcgggggtcatcagagc
gagttgatcgatttcgacgtggccacgtacagtgaggtaggttccgttccggccggacag
aatgggtgtgcaattttgcgactgcactcgcgttatctgtgcgagggagatcctttcggg
aagatcacgcttcgtgatccgaatagtttgtctgcggaacatgagctgctgacccactcg
ggaagtctgtccgactttgacgttcaggggaattatctgatctcgtgtgggtttagtgga
cggcagggaaatttggcaatcgaccgatttttaatggtttacgatatgcggatgttgcga
ctggtttcgccaatccaatgtctggtggaacctcagctgatgcgatttttgccgtcgcac
actgatcggctggccgtcgtttctccgttgggtcagctgcagctagtagacactgtggaa
ctaagcgaacccagagtttgcatgttccagattaataccagtggcagccaatgtctgacc
ttcgacatcagctcgtccagccaagcgatggcatttggagaccaatccggtcacatcaac
ttggtagctgccgtcaaaataaacacaccagcgctgcaattcaacccgttttcaagagaa
actgaattcgccgacacagttgaaccgctgccaatggtgtccatcaccgataagaacttc
ccactatcctcgatactgcttccacatctgaccaccggaacacgttggctaagcgattgg
cccgaattcctgaacagttacgagtatctcaaaccgaaagccatcccgtcggaaatcaac
tccacgatgaagatgcaaggaccaatcggatacgctccaaacccgaagacatcactgcgc
aatcagatcccgtacaagatggacaagagctctgcctcaaacacgaacgcaactccggtt
agcagctcgcaaaagggcaccacggaacagggaatgaagctggttcctcgtcggtaccgc
aaggtcgaggtcaagtacagcaaactcggctttgaggaatttgattttgaatcttacaac
cagacaggatttgtcggcttggaggccaacctcccgaacgcgtactgcaacgccatgctg
cagtccctgtactttatcgttccgctgcggaaggccatcctgtcgcactgctgctcgaag
gaattttgcctcgcttgcgagctaggcttcctatttcacatgctcgatcttggcttttcc
aatcaaccatgccaggccagcaatttcctgcgttcgttccgcaccgtaccggaggcggcc
gccctcggattaatcctttcctccgatcggagcaacaacgctagcctaaatctatgcagc
ttgattcaaaattggaaccgattcattctccaccaaatgcactacgaactgctggaagca
atcaagaaaaacgaggccacgacgggaatcccgcaagactgccaagaaatgctcgacagc
gaagtccaacagtacaactcacaaaacgaaaagttccaattcctcgaagccagcaacgat
tccgacccggccacgacaacccccgaatcacccgatccggtaccctcgcccggagtagga
ggaggaaccgcccaaaacaaggaaaccgataccgaaatcagccgtctcttcggaacgcaa
caaaaaacgatccaacgctgtctcaagtgcaacgtcgaacgcgtcaaaaagaacattctg
ctcgtgtgcaacatgctctaccccaccggctccggcaccggttccgcgccacagcgccac
atcgagggcacgttcgcttcgatcctgaaaaactccctaaccgtggagaaaacaacgccg
gcgtggtgcgaaaaatgcaacaaattcacccccacaaaccagaagagtcgcgtggccgac
ctgccggaaatactctccatcaactgtggcctcgagacggacaaggagctcgagtacttg
aagcgccagatggtgcgatcgtcggcgcaggtcacgggtgtttgtgcgggtggtgcagga
acgggagcgtcgacggcgaccacggagggaggcgatacgcgcaacggaaacggcaagatg
tgccgctacgggatgaactgctcccgcgtggattgccacttttcacatccgagaaaatct
tccccgatcgtaatcacaagtgcaagtcaggttcagcccaagtcctggttcccactgagc
ttccggatggccctagacgagcaggacaatttagaggttggttctctgaagggtgcttcg
agcagtgtcagctacagcgacgataacgagtccgaacaggaggccaaacccttccggaga
tccaagcggtacagcctgtcggcggccgtttgctacatcaacgacggcgcccagcgcaac
ttggtggcgctgatccacgtacccaagagctatcatgatctgaagcagaaccgcggtgga
gagtccagcaccggaatctccggagtggacttcaccgacggcagttggtacatcttcaac
gattttagtatttcaccggtgtcggtccaggaggcggtttggttcacgctcgactggaag
gtgccctgcgtgctgttctacacgagtacgacgttgaaaaatgaagaagacgaaaacaag
gacagcctcaaccatccaactcccttcacgaacgacctgttctttgccgatcagaacacc
gatgaaatcgcggacaaaaacttcaaaccactgacaccggacgaaatcttccaagcaggg
gatctggtggccatggacgccgaattcgtcacgctaaacccggaagaaagcgaaattcgc
tccgacgggaaaatgtccaccgtaaagccaagccacatgagcgtcgcccggatcacgtgc
attcgtggccaaggtaaagacgaagcagttcccttcgtggacgattacatctcaacccag
gaacaggtcgtcgactatctcaccaagttctccggcatcaaaccgggcgatctggacgca
aacttcagcaacaaacgactcaccacgctgaagaactcctaccaaaagctgcgctacctc
gtcgatagcggagtcatcttcgtgggtcacggcctgaaaaacgacttccgcgtcatcaac
attatcgtcccgccggagcagatcgtggacaccgttcatctgttccatctgccccaccac
cggatggtgtcgttgcgcttcctggcgtggcagtttctgggcattaaaattcagtccgag
acgcacgactccgtggaggacgcccgcacggcgctgcagctgtacaaacactacctgaag
ctgaacgccaaggacgagtttacgatggcgctgtcccagctatacgaaacgggcaagaag
ttgcagtggaaggtgccggattga
DBGET
integrated database retrieval system
