Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ005981
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Entry
CpipJ_CPIJ005981 CDS
T01079
Name
(GenBank) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CpipJ_CPIJ005981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqu03019
]
CpipJ_CPIJ005981
03041 Spliceosome [BR:
cqu03041
]
CpipJ_CPIJ005981
03009 Ribosome biogenesis [BR:
cqu03009
]
CpipJ_CPIJ005981
03016 Transfer RNA biogenesis [BR:
cqu03016
]
CpipJ_CPIJ005981
Enzymes [BR:
cqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CpipJ_CPIJ005981
Messenger RNA biogenesis [BR:
cqu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CpipJ_CPIJ005981
Spliceosome [BR:
cqu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CpipJ_CPIJ005981
Complex C
U4/U6.U5 tri-SnRNP related factors
CpipJ_CPIJ005981
Ribosome biogenesis [BR:
cqu03009
]
Eukaryotic type
Pre-60S particles
Helicases
CpipJ_CPIJ005981
Transfer RNA biogenesis [BR:
cqu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CpipJ_CPIJ005981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
AAA_22
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
EDS25918
UniProt:
B0WF10
LinkDB
All DBs
AA seq
1045 aa
AA seq
DB search
MAAVDDLFNLFDAENEEEDDGGSVPIVVPEDKPGKIEVDDDGDEGAVKEAEPVATKRELE
KIEVDDEDDDDVEEVEPCKKAKLVESLLDDINLDNIESRIKVHTIQSPEACTHEVAVYPD
HKYMPLVAPTGKPAKEYQFVLDPFQKEAILCIENQQSVLVSAHTSAGKTVVAEYAIAKSL
AEKQRVIYTTPIKALSNQKYREFHEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRG
SEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHI
HKQPCHVVYTDYRPTPLQHYLFPVGGDGIHLVVDEKGTFKEDNFNTAMAVLQNAGEAAKG
DQKGKKGGLKATNSGETNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMSKLDFNSTT
EKKLVDEVFNNAMDVLSEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGL
IKALFATETFAMGLNMPARTVLFTGPRKFDGKDFRWVTSGEYIQMSGRAGRRGLDDKGIV
ILMIDEAVSPAVGKEIVQGKPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQ
SSIPEIYKKVQRKQKELEGVHIKDEQSIMTYHNVREQLDTLGKQFRDYITRPTYLVPFLQ
PGRMIKIKSDAGEFEWGIIVNFKKETVDAKANPLKSETKVIIDVLLHVDDGFEKEGVPKP
CPPSKRGSVEVVPVLHSLVHRISSLRVYYPNDLRPADNRRSVLKTINEVKKRFPAGPPLL
NPINDMHIKEKDFQDTVDLIDKFEKRLFAHPLHDSPELDKLYTKYMGKLEIERALKQEKN
SLREAKSLLHMDELKHRKRVLRRLGYCTTADVIEFKGRVACELSCADELLLTEMIFNGTF
TNLTTAQACALLSCFVCDEKSTELPAATEELSGPLRQMQDLARRIAKVSNECKVELDEER
YVESFKPFLMDVVLAWCKGSSFLQLCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNT
DLENKFADAIRLLKRDIVFAASLYL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcgacgatctgttcaacctgtttgacgccgagaacgaggaggaggacgac
ggcggaagcgttccgatcgtggtcccggaagataagccgggcaagattgaggtggatgac
gacggcgatgagggtgcggtgaaggaggcggaaccggtggccacaaagcgggagctggag
aagattgaagtcgacgacgaggacgatgacgatgtggaggaggttgaaccgtgtaaaaag
gcgaagcttgttgagtcgctgctggatgatataaacttggacaacatcgagtctcggatt
aaggtgcacacgattcagtcgccggaggcgtgcacgcacgaggtggccgtctatccggat
cacaagtacatgccgttggtggcgccaacggggaaacctgctaaggagtaccagttcgtg
ctggatccgttccagaaggaggcgattctgtgcattgagaatcagcagtcggtgctggtg
tcggcgcacacttcggcgggaaagacggtggtggcggagtacgcgattgccaagtcgctg
gcggagaagcagcgggtcatttacacgacgccaatcaaggcgttgtcgaaccagaagtac
cgggagtttcacgaggagtttaaggacgtagggttggtgacgggggacgtgacgattaat
ccgtcggcgtcgtgcctgattatgacgacggagattctgcggaacatgctgtaccggggg
tcggagattatgcgggaggttggttgggtcgtgtttgacgagattcactacatgagggac
aaggagcggggcgtggtttgggaggagacgttgattctgctgccggacaacgtgcattac
gtgtttttgtcggcgacgattccgaacgcgcgccagttcgccgagtgggtttgtcacatc
cacaagcagccgtgccacgtggtctacacggactatcggccgacgccgctgcagcactat
ttgttcccggttgggggtgacggaattcatctggtcgtggacgagaagggaaccttcaag
gaggacaactttaacacggcgatggcggtgctgcagaacgccggggaagcggccaaaggt
gaccagaagggcaaaaagggcgggttgaaggcgaccaactcgggcgagaccaacatcttc
aagatcgtcaagatgatcatggagcgcaactttgccccggtcatcatcttctcgttcagc
aaaaaggactgcgaaatctacgcaatgcaaatgtccaaactggacttcaactccaccacc
gagaagaagctggtcgacgaggtgttcaacaacgcgatggacgtgctcagcgaggaggat
cgccaacttccccaagtggagaacgtgctgccgctgctgcgccgcggaatcggcatccat
cacggtgggttgcttccgatcttgaaggaaaccatcgaaatcctgttcggtgaagggttg
atcaaggcgctcttcgcgacggagaccttcgccatgggactgaacatgccggcgcgaacg
gttctctttaccgggccgaggaagtttgacggaaaggacttccgctgggtcacctccggc
gagtacatccagatgtcgggacgagctggtcgtcgtggcctggacgacaaaggtatcgtc
attctgatgattgacgaagcggtttccccggcggtcgggaaagagatcgttcagggcaaa
cccgatccgatcaactcggcgttccacttgacctacaacatggtgttgaacctgcttcgc
gtcgaggaaatcaaccccgagtacatgctggagcgatcgttcttccagttccagaaccaa
tcctcaatccccgaaatctacaaaaaggtccagcgcaagcagaaagagctcgaaggcgtc
cacatcaaagacgaacaatcgatcatgacgtaccacaacgtgcgcgagcagctcgacacg
ctcggcaagcagttccgcgactacatcacgaggccaacctacctggtcccgttcctccag
cccggccgcatgatcaagatcaaatccgacgccggcgagttcgagtggggcatcatcgtc
aacttcaaaaaagaaaccgtcgacgccaaagccaaccccctcaaatccgaaaccaaggtc
atcatcgacgtcctcctccacgtcgacgacggcttcgaaaaggaaggcgtccccaaaccc
tgcccaccctccaagcgcggctccgtcgaagtcgtccccgtcctgcattccctcgtccac
cgcatcagctcccttcgcgtctactacccgaacgacctccgccccgccgacaaccgccgc
tccgtcctcaaaaccatcaacgaagtcaagaaacgcttccccgccggcccgcccctcctt
aaccccatcaacgacatgcacatcaaggaaaaggacttccaagacaccgtcgacctcatc
gacaagttcgagaagcgactcttcgcccaccccctccacgactcccccgaactcgacaaa
ctctacaccaagtacatgggcaaactggaaatcgaacgcgccctcaaacaggaaaagaac
tccctccgcgaagccaagtccctcctccacatggacgagctcaagcaccgcaagcgcgtc
ctccgccgactcggctattgcaccaccgccgacgtcatcgagttcaaaggccgcgtcgcg
tgcgaactcagctgcgccgatgaactcctgctcaccgaaatgatcttcaacggcaccttc
accaacctcaccacagcccaagcctgcgccctgctctcatgcttcgtgtgcgacgaaaag
agcacggaactccccgccgccaccgaagaactgtccggcccgctccgccaaatgcaggat
cttgcgcggcgaatcgccaaagtgtccaatgagtgcaaggtcgagctggacgaggaacgc
tacgtggaatcgttcaagccattcctcatggacgtcgtgctcgcgtggtgcaaaggttca
tccttcctgcagctgtgcaagatgacggacatctttgaggggtcgatcattcggtgtatg
cgacggctcgaggagttgctgcggcagatggtacaggcctccaagacgatcggcaatacg
gacctggagaacaagtttgccgacgcgatacggctgctcaagagggacattgtgtttgcg
gcgtcgttgtatttgtaa
DBGET
integrated database retrieval system
