KEGG   Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ012025
Entry
CpipJ_CPIJ012025  CDS       T01079                                 
Name
(GenBank) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cqu  Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cqu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CpipJ_CPIJ012025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cqu03041]
    CpipJ_CPIJ012025
Spliceosome [BR:cqu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    CpipJ_CPIJ012025
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 PRP4 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_SCAP WD40_like Beta-prop_WDR75_2nd Beta-prop_SPT8 WD40_RFWD3 CD59 Beta-prop_HPS5
Other DBs
NCBI-ProteinID: EDS36830
UniProt: B0WY20
LinkDB
AA seq 506 aa
MSDDEELVFAKRPRTIHYGSLEDSERARQMADSGGPSGSSSGDIGQIYTSSDYFDLENEV
SKDKAALLEEFERKKKARQIHVSTDDSEVKRNLRALNEPICYFGEGPAERRIRLKELLAA
LGESAIPTKSSKDDDKKQSQSQKLEQESTWYHEGPEALRIARIWLANYSLPRAKERLDAA
SEQLNLPSATKAGRMVELQKRIQSLAPMCSQVGDVRPITNCSFNHDSTLLMTSSLSSLCK
VWSVPDCNLVQTLRGHQFYVSAIAFRNGVATDSKGEVAMASGCYDGTVKLWSFDSEEAVA
DITGHVPHRVARLAFHPSGRFLGTACYDSSWRLWDLEQKQEVLHQEGHAKAVHCIAFQID
GSVCVTGGLDAFGRVWDLRTGRCIMFLEGHLSGIYGVDFSPNGYHIVTGSQDNTCKIWDL
RRRNPVYTIPAHTNLISDVKYQKNGGHFLVTSSYDSTAKIWSNKTWQPLKTLSGHDSKVM
SVDISPDSQHIATTSYDRTFKLWSPE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtccgacgacgaggagctagtgtttgcgaagcggccccgcaccatccactatggttcg
ctggaggactcggaacgggcgcgccagatggcggactcgggtggcccatcggggagttcc
tccggggacattggccagatttacacttccagcgattactttgacctggagaacgaggtc
tcgaaggataaggcagcgctgctggaggagtttgagcggaagaagaaggcccggcagatt
cacgtcagtacggacgattcggaggtgaagcggaacctgcgagcgttgaacgagccgatt
tgctactttggggaggggccggcggagcggcgcattcggttgaaggagctgttggccgcg
ctgggcgagagtgcgattccgacaaagagttccaaggatgacgacaaaaagcagtcgcag
tcgcagaagttggaacaggaatcgacgtggtaccacgagggaccggaagcgttgcggatt
gcgcgaatttggctggcgaattactcgctgccaagggcgaaggaacggctggacgcggcg
tcggaacagctgaatctgcccagtgccaccaaggccggccggatggtcgagctgcagaag
cggatccaatcgctggctccgatgtgcagccaggtcggcgacgtgcggccaatcaccaat
tgtagcttcaaccacgactccacgctgctgatgacgtcctcgttgagttcgctgtgcaag
gtttggtccgttccggactgcaacctggtgcagacgcttcgcggtcatcagttttacgtg
agtgcgatcgcgttccggaacggagtcgccaccgattctaagggcgaggtcgccatggcc
tcagggtgttacgatggaaccgtcaagctgtggtcgtttgacagtgaagaagccgtcgcg
gacatcaccgggcacgtgccgcatcgagtggcacggcttgccttccacccttcgggacgc
ttcctcggaacggcctgttacgactcgtcctggcggctgtgggacctcgaacagaagcag
gaagtcctgcaccaagagggtcacgccaaagccgttcactgcatcgcattccagatcgac
ggaagcgtctgcgtcaccggcggcctcgacgcctttggccgcgtgtgggacctccgcacc
ggtcgctgcatcatgttcctcgaaggtcacctgagtggcatctacggcgttgacttctcc
cccaacggctaccacatcgtgaccggatcccaggacaacacgtgcaaaatttgggatctt
cgccggcgcaacccggtctacacgattccggcgcacacgaacctcatttccgacgtcaag
taccagaagaacggcggccacttcctggtaacttcaagttacgacagcacggcaaagatc
tggtcaaacaagacgtggcagccgctcaagacgctgtccggccacgacagcaaggtgatg
agcgtggacatttcgcccgactcgcagcacatcgcgaccacctcgtacgaccggaccttc
aagctgtggagtcccgaatga

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