Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ012300
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Entry
CpipJ_CPIJ012300 CDS
T01079
Name
(GenBank) nonsense-mediated mRNA decay protein 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03013
Nucleocytoplasmic transport
cqu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CpipJ_CPIJ012300
03015 mRNA surveillance pathway
CpipJ_CPIJ012300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqu03019
]
CpipJ_CPIJ012300
Enzymes [BR:
cqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CpipJ_CPIJ012300
5.6.2.5 RNA 5'-3' helicase
CpipJ_CPIJ012300
Messenger RNA biogenesis [BR:
cqu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CpipJ_CPIJ012300
mRNA cycle factors
Common to processing body (P body) and stress granule
CpipJ_CPIJ012300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
ATPase
nSTAND3
AAA_22
AAA_32
SRP54
AAA_10
Motif
Other DBs
NCBI-ProteinID:
EDS37181
UniProt:
B0WYS1
LinkDB
All DBs
AA seq
1136 aa
AA seq
DB search
MSVDTYDGVVGSQTLTFLDTEENDLIGADTQGTDFDFRDFTIPSQSQTLASQLDHLVGGA
GAAGTSGTSAAGGQLNGFGRRLGSEASKIAGITSAIGELQFEEDEDDGALGAQQQDLPPH
ACRYCGIHEPSTVVMCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHGDGPLGETVL
ECYSCGVRNVFVLGFIPAKADSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFW
LVKVPTEQEQLRARQVSAAQINKLEELWKENVDATFQDLEKPGIDKEHSPVQFRYVDGYQ
YQNIFGPLVKLEADYDKRLKESQTQENIEIRWDTGLNKKTIAYFTLAKNDGDMKLMHGDE
LRLRYNGELHKPWSCVGHVIKVPDNYGEDVGLELKHNHQAPVECSSNFAVDFIWKGTSFD
RMQMALRKFAVDDNSVSNYIYSRLLGHGRQDGSDDVTFRINNLPKHFSAANLPDLNRSQV
YAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRLNGGPILVCAPSNTAVDQLTEKIHR
TNLKVVRVCAKSREAIDSPVSFLALHNQIRNMEQNSDLKKLQQLKDETGELSSSDEKRYR
MLKKQAERELLEAADVICCTCVGAGDPRLQRIKFSSILIDESMQSTEPECMVPVVLGAKQ
LILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFF
YEGSLQNGVCAEERKLKVDFPWPSPDTPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKIT
TRFLKAGVKPEQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDII
IMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYKDKKV
LVEGSLNNLKESMIQFTKPKKIVNTLNPGSHFMNTVMVDAKETGYFERGHGSGFGASSFG
NPGPIGSMVNGPRNASLDMFARTHDPISYISQERAQAAMNNMPVPVGMFMNLSNVPPRFY
QQQQAVQAAKQARRVKPGPIGSKPKPRPIGPPSSQNNAIGAGSLTQGMSQNMSQPGFSLS
QQPDFSQDYLAEYQSQVDGLLSQDSTFGAGPSQSGVGSGADRLVFELPPNQFSQPY
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtacgacggggtggtcggctcgcagacgctgaccttcctggacacc
gaggagaacgacctgatcggggccgacacgcagggcacggactttgacttccgggacttt
accattccgtcccagagccaaacgttggcctcgcagctggaccacctcgtgggaggagcg
ggagccgccggtacaagcggaaccagtgccgccggaggacagctcaacgggttcgggcgt
cggctcgggtcggaggcgtccaagatcgccggcatcacgtccgccatcggcgagctgcag
ttcgaggaggacgaagacgatggggccttgggcgcccagcagcaggacttgccgccgcac
gcgtgccgttactgcggcattcacgaaccgagcacggtcgtgatgtgcaacatctgcaag
aagtggttctgcaacgggcgcggcagcacgtccgggtcgcacatcgtgaaccatctggtg
cgggcgaagcaccgcgaggtgacgctgcacggagatgggccgctcggggagaccgtgctg
gagtgctactcgtgcggggtgcggaacgtgttcgtgctggggttcataccggccaaggcg
gactcggtggtggtgctgttgtgcagacaaccgtgcgccgcgcaaaactccatcaaggac
atgaactgggaccaggagcagtggaagccactgatcgccgaccggtgcttcctgttctgg
ctggtcaaggtgccgaccgagcaggagcagctgcgcgcgcgccaggtttcggccgcccag
atcaacaagctggaggagctgtggaaggagaacgtggacgcgaccttccaggatctggag
aagcccggcatcgacaaggagcactcgccggtgcagttccggtacgtggacgggtatcag
taccagaacatttttgggccgctggtcaagctggaggcggactacgacaagcgtttgaag
gagagccagacgcaggagaacatcgagatccggtgggacacggggttgaacaagaagacg
attgcttactttacgctggcgaagaacgatggcgatatgaagctgatgcacggggacgag
ttgcggctgcggtataacggggagctgcacaagccgtggagttgcgtggggcacgtgatt
aaggtgccggacaattacggggaggatgttgggttggagttgaagcacaaccatcaggcg
ccggtcgagtgcagttcgaactttgcggtggattttatttggaaggggacgtcgtttgat
cggatgcagatggcgctgcgcaagtttgcggtggacgacaacagcgtgtcgaactacatc
tactcgcggctgctgggacatggcaggcaggacgggtcggacgatgttacgttccggatt
aacaatttgccgaagcactttagtgcggccaatttgccggatttgaaccgctcgcaggtt
tacgccgtgaagcatgcgctgcagcgtccgctgagcttgatccagggtccgccgggaacg
ggcaagacggttacgtccgcgacgatcgtgtaccagctggtgcggttgaacggcgggccg
attttggtgtgcgccccgagtaacactgcggttgatcagctgacggagaagattcaccgg
acgaacctgaaggtggtgcgagtttgtgccaagtctcgggaggcgatcgattcgccggtg
agctttttggcgctgcacaaccagatccggaacatggagcagaacagcgatctgaagaag
ctgcagcagctgaaggatgaaacgggggagttgagttcgtcggacgagaagcgctaccgg
atgttgaagaagcaagcggagcgggaattgctggaggcggcggacgtgatttgctgcacg
tgtgttggtgcgggggatccgcggcttcagcgcatcaagttcagctcgattctgattgac
gagtcgatgcagtctacggagccggagtgcatggttccggtggtgctgggagcgaagcag
ttgattctggttggagaccactgccagctgggaccggtcgtgatgtgcaagaaggcggcc
aaggctggattgtcgcagagtttgttcgagcggttggtggtgcttgggattcgtccgttc
cggctggaggttcagtatcgtatgcacccggagttgtcgcagtttccgtcgaactttttc
tacgaaggcagtctgcagaacggggtgtgtgctgaggagcgcaagctgaaggtagacttt
ccgtggccgtcaccggatacgccgatgttcttcttggtgacccaagggcaggaggaaatt
gccggatcgggaacgtcctacttgaatcgtaccgaagcgtcgaacgtggagaagatcacg
acgaggttcttgaaggctggggttaagccggagcagattggcatcattacgccgtacgag
ggccagcgggcttatttggtgcagtacatgcagtaccagggttcgctgcactcgaagctg
taccaggagattgagattgccagcgtggatgctttccagggtcgcgagaaggacattatc
atcatgtcgtgcgtgcgctcgaacgaacatcagggcatcggatttttgaacgaccctcgg
cggttgaacgtggcgctcacccgtgccaagtacggaatcatcatcgtgggtaatccgaag
gtactttcgaagcagcagctgtggaaccatttgctaaacttttacaaagataagaaagtg
ctggtcgagggttcgctgaacaatctgaaggagtcgatgattcagtttaccaagccgaag
aagatcgtaaacacgttgaatccgggctcgcactttatgaacaccgtcatggtcgacgcc
aaggagaccggctactttgagcgtgggcacggttccggattcggagcgagttcgtttggc
aatccgggcccaatcggaagcatggtgaacggaccgcgcaacgcatcgctggacatgttt
gcccgaacgcacgatcccatcagctacatttcgcaggaacgcgcccaagccgccatgaac
aacatgccggttccggtgggaatgtttatgaacttgtcgaacgttccgccgcgtttctac
cagcagcaacaggccgtccaagcggccaagcaagctcgccgcgtcaaacccggaccgatc
ggtagcaagccgaagccgcgcccaatcggacctccgtccagccagaacaacgccatcggc
gccggttcgctcacccagggcatgtctcaaaacatgtcccagcccggtttcagcctgtcc
cagcagccggacttttcccaggactacctggccgagtaccagtcccaggtggacgggctc
ctctcgcaggactccacctttggcgccggccccagccaatcgggcgtcggcagtggcgcc
gaccggctcgtgtttgaacttccaccgaaccagttctcccaaccgtactga
DBGET
integrated database retrieval system
