Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ013139
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Entry
CpipJ_CPIJ013139 CDS
T01079
Name
(GenBank) pre-mRNA-splicing helicase BRR2
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CpipJ_CPIJ013139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqu03041
]
CpipJ_CPIJ013139
Enzymes [BR:
cqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CpipJ_CPIJ013139
Spliceosome [BR:
cqu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CpipJ_CPIJ013139
Complex C
U5 SnRNP specific factors
CpipJ_CPIJ013139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
AAA_19
HTH_61
SWI2_SNF2
PhoH
nSTAND3
T2SSE
Motif
Other DBs
NCBI-ProteinID:
EDS38587
VectorBase:
CPIJ013139
UniProt:
B0X1D8
LinkDB
All DBs
AA seq
2144 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVLSLVGKLDGTKMGDRHQRTK
PEKTEERKAKRQKRDEAQYDFNSMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI
QEAIGDQPRDILCGAADEILAVLKNDKLKDRERKREIDGLLGTVTDERFALLVNLGKKIT
DFGTDSAVAAGAGAGVTTDEHIDETYGINVQFEESEEESDEDKYGEIRDDDVLDEGEEAR
DDGMLHAENLGGNEEGKKEKALDPRDIDAYWLQRSLRKYYNDSVMSQAKAAEVMNIFKSA
ADDRECESQLVNLLGFDCFDFLKLIKKNRQMILYCTMLASSQSESERVKIREKMKADPFL
AKILRQLDTGKQEVDDYDSEKSKMQRRRKEQDDDNMEGIGGQIPGSRTVLELDELAFTQG
SHLMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFEEEEELMVIEKLPKYVQPVFAGFK
TLNRIQSRLYKTALESDENLLLCAPTGAGKTNVALLTMMREIGKHINDDGTINVDEFKII
YIAPMRSLVQEMVGNFGKRLATYNLTVSELTGDHQLSREQIAATQVIVCTPEKWDIITRK
GGEKTYTQLVRLVIIDEIHLLHDERGPVLESLVARTIRNIETTQEDVRLVGLSATLPNYQ
DVATFLRVRPETGLFYFDNSYRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGKN
QVLVFVHSRKETGKTARAIRDMCLEKDTLGSFLREGSASMEVLRSEAEQVKNGELKDLLP
YGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKG
RWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQLISKMPD
MLNAEIVLGTIQNVKDAVTWLGYTYLYIRMLRQPTLYGVSYDAIKEDPLLEHFRANLVHT
AALHLEKSGLIKYDRKSGHFQVTEIGRIASHYYCTHDTMLTYNQLLKPTLSEIELFRVFS
LSGEFRNITVREEEKLELQKLMERVPIPIKESMEEPSAKVNVLLQAYISQLKLEGFALMA
DMVYVTQSASRLLRAIFEIVLHREWAQLADKCLTLCKMIDRRMWQSMSPLRQFRKMPEEI
VKKIEKKNFPWERLYDLEANEIGELIRVPKLGKTIYKYVHQFPKLELSTHIQPITRSTLR
VELTITPDFQWDEKVHGQSEAFWILVEDVDSEVILHHEYFLLKYKYCQDDHLVKFFVPVF
EPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPISALREPRFEE
LYADRFPQFNPIQTQVFNAVYNSEDNVFVGAPTGSGKTTIAEFAVLRMLQQNPHGRVVYL
VSRDALAELIFMDWHQKFGQNLGCKVVKLTGETGTDLKLIAKGQIIVTTADKWDILSRRW
KQRKNVQNIQLFIVDELQLIGGEEGPVLEVVCSRMRYISSQIEKQIRIIALSASLSDARD
VAQWLGCNANATFNFHPSVRPIPLELHVQGFNITHNASRIAAMSKPVYNAVTKFSPHKPV
IVFVSSRKLARLTAIDILTYCAAEAQPNRFFHAEEEDIKPFLDRMTDKTLKETLSQGVAY
IHEGLTASDHRIVEQLFDSGAVQIAVVTRDLCWGLNISAYLVVIMDTQFYNGKSHSYDDY
PVTDVMQMVGRANRPLEDDDAKCVLMCQSSKKDFFKKFLNESLPVESHLDHRMHDHFNAE
IVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVESTLSDLEQS
KCISVEDEMDTLPLNLGMIAAYYYINYTTIELFSLSLNAKTKIRGLLEIISSAAEYEDVV
VRHHEDNILKSLAARLPNKLTGPNGTAPKYNDPHIKTNLLLQAHLSRLQLGAELQGDTEQ
ILGKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFNADIVKRC
QEKNIETVFDIMELDDEDRIRLLQLNDQQMSDVARFCNRYPNIEMTFEVVDKDRIHSGSS
VNVVVNLEREDDVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDF
VAPSPGHHDYTLYYMSDSYLGCDQEYKFNINVGDFQSESESESD
NT seq
6435 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcagcagctcggcagctgcagtacgagtacaaagcgaactcgaacttggtg
ctgcaggcggatgtgcggttgattgagcgtccgcggcgggatgaagctaccggggaggtg
ttgtcgctggtgggcaagttggacgggactaagatgggcgatcggcaccagcggaccaag
ccggaaaagacggaggagcggaaggccaagcggcagaagcgagacgaggcgcagtacgat
tttaacagcatgaagggcgcgacgctgctgtcggaggggattgatgagatggtcgggatt
gtgtatcggccgaagacgcaggaaacgcggcagacttatgaggtgttactcagttttatt
caggaagcgattggagatcaaccgagggatattttgtgcggggcggccgatgagattttg
gcggtgctgaagaatgataagctgaaggatcgcgaaaggaagcgcgagattgatgggttg
ctcgggacggtcacggatgagcggttcgcgttgttggttaatttggggaagaagattacc
gactttgggacggattcggctgtcgctgcgggggcgggagctggggtgaccaccgacgag
catattgatgagacgtacgggattaatgtgcagtttgaagagtcggaagaggagagtgat
gaggataagtacggagagatccgggatgatgacgtgttggacgagggggaggaggcgcgt
gacgacggaatgttgcacgcggaaaacctcggtggcaacgaggaaggcaagaaggagaaa
gcgcttgatccgcgggacattgacgcatactggttgcaacggtcacttcgaaagtattac
aacgattcggtcatgtcccaggcgaaggctgcggaggtgatgaacatcttcaagagtgct
gctgacgaccgggagtgtgagagtcagctggtcaatctgcttgggtttgactgtttcgat
ttcctcaagttgatcaagaagaacaggcagatgattctgtactgtacgatgctggcttcg
tcgcagagcgaaagcgagcgggtcaagattcgcgaaaagatgaaggctgatccgtttctg
gcgaagattttgcgtcaactggacacgggcaagcaggaggtagatgattacgatagcgaa
aagagcaagatgcaacgccgtcggaaggaacaggacgacgacaatatggagggcatcggg
ggacaaattcctggtagtcgaactgtgctggaattggacgaactcgcgttcacccaaggc
tcccacctgatggccaacaaacggtgccagctgcccgacggaagtttccgcaaacagcgc
aaaggttacgaagaagtgcacgtgccggcgttgaagccgaaaccctttgaagaggaagag
gaactgatggtcatcgagaagctgcccaagtacgtgcagcccgtgttcgccggtttcaaa
acgctcaaccgaatccagagtcgtctgtacaagacggccctcgagagcgatgagaatcta
ctgctgtgcgccccgaccggtgccggtaaaacgaacgtggccctgctcaccatgatgcgc
gagatcggcaagcacatcaacgacgacggaacgatcaacgtggacgagttcaagatcatc
tacattgcgccgatgcgatcgctcgtacaggaaatggtcggaaactttggcaaacgcctc
gccacgtacaacctgaccgtgtccgagttgaccggagatcaccagctgagtcgggagcag
attgccgcaacgcaggtcatcgtgtgcacgccggaaaagtgggacatcatcacgagaaag
ggcggcgaaaaaacgtacacccagctggttcggttggtcatcatcgacgaaatccatctg
ctgcacgacgagcgtggtccggtgctggaatcgctggtcgcacgaacgatccgtaacatt
gaaaccacccaggaagatgtccgcctggttggactgtccgccacccttccaaactaccaa
gacgtggcgacgttcctgcgagtgcgaccagaaaccggtctgttctactttgacaacagc
taccggccggtcgccctggagcagcagtacattggcgtgacggagaagaaggcgctcaag
cggttccaggtcatgaacgacatcgtgtacgagaaggtgatggaacacgccggcaagaac
caggtgctggtgtttgtgcactcgcgcaaggaaacggggaagacggcgcgcgccatccgg
gacatgtgcctggagaaggacacgctcgggagcttcttgcgggaaggttccgccagtatg
gaggtgttgcgctccgaagcggagcaggtgaagaacggtgagctgaaggacttgcttccg
tacgggtttgcgatccatcacgccgggatgacgcgagttgatcgtacgctggttgaagat
ctgttcgccgatcggcacatccaggtcctggtttcgacggccactcttgcgtggggtgtg
aatctcccggcgcacaccgtcatcatcaagggaacgcaggtttacaacccggaaaaggga
cgctgggtcgagttgggcgcgttggacgtgctgcagatgttgggtcgtgcgggtcgtccc
cagtacgacacaaaaggcgagggaatcctcatcaccaaccacagcgagctgcagttctac
ctgtctctgctgaaccaacaactccccatcgaatcgcagctcatctccaaaatgcccgac
atgttgaacgccgaaatcgtgctcggtacgatccagaacgtcaaggacgccgtcacctgg
ctcgggtacacgtacctgtacatccggatgctccgccaaccgacgctgtacggcgtgtcg
tacgacgccatcaaggaggacccactgctggagcacttccgcgccaacctggtccacacc
gcagctctgcacctcgagaagagtggcctcatcaagtacgaccgcaaaagcggtcacttc
caggtcaccgaaatcggtcgaatcgcctcccactactactgcacgcacgacaccatgctc
acgtacaaccagctgctcaagccaaccctcagcgagattgaactgttccgcgtgttttcc
ctgtccggcgagttccgcaacatcacagttcgcgaggaggagaaactcgagctgcaaaag
ctgatggagcgcgtcccgatcccgatcaaggaaagcatggaggaacccagcgccaaggtc
aacgtcctcctgcaagcctacatctcccagctgaagctcgagggcttcgccctgatggcc
gacatggtgtacgtgacccagtccgcgtcccgactgctgcgtgccatcttcgagattgtc
ctgcaccgggagtgggcccaactggcggacaagtgcctcacgctgtgcaagatgatcgat
cggcgcatgtggcagagcatgtccccgttgcgtcagttccgcaagatgcccgaggagatc
gtgaagaagatcgagaagaagaacttcccgtgggagcggctgtacgatctggaggcgaac
gagatcggagagttgattcgcgtgccgaagctgggcaagaccatctacaagtacgtgcac
cagttcccgaagctggagctgtccacgcacattcaaccgattacgcgatctacgctgcgc
gtcgagttgaccatcacgccggacttccagtgggacgagaaggttcacggccagtcggag
gcgttctggattttggttgaggacgtcgactccgaggtgatcctgcaccacgagtacttc
ctgctcaagtacaagtactgccaggacgaccacctggtgaagttcttcgtgccggtgttt
gaaccgttgccaccgcagtacttcctgcgcatcgtgtccgaccggtggattggcgccgag
acgcaactgccggtttcgttccgccacctgattctaccggagaagaatctgccgccgacg
gagctgctcgatttgcagccactgccgatcagtgcgctgcgtgagccacgcttcgaagag
ctgtacgcggaccggttcccgcagtttaacccgatccagacgcaggtcttcaacgcggtg
tacaacagcgaggacaatgtgtttgtgggtgcgccaaccgggtcgggcaagacgacgatc
gcggagtttgccgtgctgcgaatgttgcagcagaatccgcacggtcgggttgtctatttg
gtctcgagagacgcgctggccgagctgatcttcatggattggcaccagaagtttggccag
aacttgggctgcaaggtggtcaagttgacgggggaaaccggaacggacttgaagctgatt
gccaagggacagatcatcgtgaccacggcagacaagtgggacattttgtctcggcgttgg
aagcagaggaagaacgtccagaacatccagctgtttattgtggacgagctgcagctgatt
ggcggtgaggaaggacctgtgttggaggtcgtctgctcccgtatgcggtacatttcgtcc
cagattgagaagcagattcggatcatcgccctgtcggcatcgctgtcggacgcccgggac
gtagctcaatggctgggttgtaacgcgaatgcgaccttcaacttccacccgagcgtgcgg
ccaatcccgctggaactgcacgtgcagggattcaacattacgcacaacgcgtcccgcatt
gcggccatgtcgaagccggtgtacaacgccgtaaccaagttcagtccgcacaaaccggtg
attgtgtttgtgagctcgcggaagttggctcgattgacggcgattgacattttgacgtac
tgcgcggcagaagctcaaccgaatcggttcttccacgccgaagaggaggacattaagccg
ttcctggatcgcatgacggataaaacgctgaaggagaccctctcgcaaggggttgcgtac
atccatgaaggcttgacggcgtcggatcatcgcatcgtggagcagttgttcgattccggg
gcggtgcagattgccgtcgtcacgcgggatctgtgctggggtttgaacatttccgcctac
ctggtggtcatcatggacacgcagttctacaacggtaagagtcactcgtacgacgactac
ccggttacggacgtcatgcagatggtgggacgggccaaccgtccgctggaggatgacgac
gccaagtgcgtgctgatgtgtcagagctccaagaaggacttcttcaagaagttcctcaac
gagagtctaccggtggaaagtcatctggatcatcgtatgcacgatcacttcaacgcggag
atcgtcaccaaaaccatcgaaaacaaacaggacgccgttgattaccttacctggacgttc
ctgtaccgacgactcacccagaaccccaactactacaacctgcagggcgtcacccaccga
cacttgtcggaccacctgtccgaactggtcgagtcgaccctctccgacctggagcagtcc
aagtgcatcagcgtggaggacgagatggacacgctgccgctgaatctgggcatgatcgct
gcgtactactacatcaactacaccacgatcgagctgttcagcttgtcgttgaacgccaag
accaagatccgcggcctgctggagatcatctcgtcggcggccgagtacgaggacgtggtc
gtgcgtcaccacgaggacaacattctgaagagtttggccgcgcggttgccgaacaagctg
accggtccgaacggaaccgctcccaaatacaacgacccccacatcaagacgaacctgctg
ctgcaggcgcacctctcccgcctccagctcggcgccgaactccagggcgacaccgagcag
atcctcggcaaggcgatacgcctcatccaagcttgcgtggacgtgctcagctcgaacggg
tggctctcgccggccgtcgccgccatggagctcgcccagatggtgacgcaggccatgtgg
agcaaggactcgtacctgaagcagctgccgcactttaacgccgacattgtgaagcgctgc
caggagaagaacatcgaaaccgtgttcgacatcatggagctggacgacgaggaccgcatc
cggctgctgcagctcaacgatcagcaaatgtcggacgtggcacggttctgcaaccgctac
cccaacatcgagatgacgttcgaggtcgtcgacaaggaccgcatccactcgggctcgtcc
gtcaacgtggtggtcaacctggagcgggaggatgacgtcaccggaccggtcattgcgccg
ttcttcccacagaaacgcgaggagggctggtgggtggtgatcggcgacccgaagacgaac
tcgctgctctcgatcaagcggctgacgctccagcagaaggccaaggtcaagctggacttt
gtggcgcccagcccgggccaccacgactacacgctgtactacatgagcgactcgtacctg
ggctgcgaccaggagtacaagttcaacatcaacgtcggcgacttccagtcggagagcgag
agcgagtcggattag
DBGET
integrated database retrieval system