Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ014804
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Entry
CpipJ_CPIJ014804 CDS
T01079
Name
(GenBank) ATP-dependent RNA helicase A
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CpipJ_CPIJ014804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqu03019
]
CpipJ_CPIJ014804
03012 Translation factors [BR:
cqu03012
]
CpipJ_CPIJ014804
Enzymes [BR:
cqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CpipJ_CPIJ014804
Messenger RNA biogenesis [BR:
cqu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CpipJ_CPIJ014804
Translation factors [BR:
cqu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CpipJ_CPIJ014804
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
HA2_C
HA2_N
nSTAND3
AAA_19
ATPase
ResIII
Cas3-like_C_2
AAA_22
DUF2202
PhoH
HEPN_AbiA_CTD
T2SSE
NACHT
SRP54
AAA_30
Motif
Other DBs
NCBI-ProteinID:
EDS40970
UniProt:
B0X5N3
LinkDB
All DBs
AA seq
1045 aa
AA seq
DB search
MSDCEDSFEEKLRKFRLNKESNPVESKTEHQPEPDMSYRSRGGGGPSRGGRGGRGHLRGK
QIGLYYANKNRGRNRDEDGEDGQWRSGKDLQRNKNRERMAYEGGDGGRDANRFRRFGDER
DDQVVTGRDRPPPGLRGRALGLYYRDRNSAKNREREKRKAVDITIPRWQILEIRKYLNLE
DGGGGKVDFFRHFVQNDEIDSVFKNEYLKVISKSLDQILREESVKEEDMLEQWQLDAKET
LNADLYDEYLRKEKLGVMREVRERLPAFGSQREILQMIDRHQVILVKGETGSGKTTQIPQ
FILDQAMSKRRGADCRIICTQPRRISAITLSERVAAERGEQLGDSVGYQIRLDAKKPRSA
GASIVFCTTGIVLSIMQSDPCLKEYSHLILDEIHERDVITDLLLGIVKKILPFRKDLKII
LMSATLTAETFSRYFNDCPTVEIPGLTFPVEEFYLEDIISEINFHGFNPGPKKPNYRDRQ
MLQFFDMIDPYIQTIRGQYPAKVLQTIANPLSESSQNDLITELIYHISATKPDGAILVFL
PSLAQISDVQKLLSAHRDLSRMSTLIYPLHSKVPQLDQKAVFSRPQKGTRKIILATNIAE
TSITIDDVVFVVNAGRHKINMFEEGVSSLRDEWISISNEIQRKGRAGRVQPGICYHLYTR
GRRNVLLQNTPPEILRVALDEVILNIKILGLGEARAFMSHLLDRPTDDVIETSLELLNRL
NAIDDDQTLTPLGYHLARLPMDPRTGKMVLLSSIFSCADPISSIAASLSFKDAFYKPFGK
EKEVGMVKRKFAKGYHSDHLMLANVIEQWKDLSGRDVQHFAYKNFLNLGTLNQLYNMKRQ
FCEYLYSAKFLQNAQVTSRANNLNSHNDKLLKAIIGAGLYPNVAFVRKVIRNRNSPDGRS
ILNIEGQGRTTMHPSSVNSTLADFESNFVVYYDKQKISGSGLTIFDTTVVNPFPLFFFGD
NHVETEGALKCNKETYELIQDLRAGFNLFLQKKICNPSPVDWSSDEGTLLRAIIQLITID
GRYEDGFDDDGGDDFGGASSSEQRW
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattgcgaggattctttcgaggaaaagcttcgcaagtttcgcctgaacaaagag
tctaatccagtggaaagcaaaaccgaacatcaacccgaaccggacatgagctaccgatcc
agaggcggaggcggaccgagccgcggaggtcgcggcggccgtggtcatttgcgaggcaag
cagatcggcctgtactacgcgaacaagaatcgtgggagaaatcgggacgaggatggcgaa
gacggacagtggagaagtggcaaagatcttcagcggaacaagaaccgcgagcggatggcg
tacgagggtggggatgggggaagggatgcgaaccggtttcggaggtttggggatgagcgg
gacgatcaggtggtgacggggagagatcggccaccgccggggttgcggggaagggcgctc
gggttgtactatcgggatcggaactcggcaaagaatcgcgagcgggagaagcgaaaggcg
gttgatattacgattccgcggtggcagattttggagattcggaagtatttgaacttggag
gatggtggtggggggaaggtggatttcttcagacactttgtgcagaacgatgagattgat
tcggtgtttaagaatgagtatttgaaggtgattagcaaaagtttggatcagattttgagg
gaggaatcggtgaaggaggaggatatgctggaacagtggcagctggatgcgaaggagaca
ctgaatgcggatctgtacgatgagtatttgaggaaggagaagttaggggtgatgagggaa
gttcgcgagcgacttccggcgtttggttcacagcgggagattctgcagatgatcgacagg
catcaggtcatcttggttaagggtgagactggaagtggtaaaacgacgcagattccgcag
tttatcctggatcaggcgatgtctaagcgaaggggtgccgattgtcggataatttgtacg
cagccgaggcgaatttcggcgatcacgctttcggagagagttgcagcggagcgtggtgaa
cagcttggggactcggttggttatcagatcaggttggatgcgaagaagccgcgatcggct
ggagcgagtatcgtgttctgcacgacgggaattgttctttcgatcatgcaaagcgatccc
tgcttgaaggagtactcgcacttgattctggacgaaattcacgaacgagacgttatcacg
gatcttctgttggggatcgtcaagaagattctaccgttccgaaaggatttgaagatcatt
ttgatgagtgcaacgctaacggcagagacgttctctcgatacttcaacgactgtccaacg
gttgaaatccctggtttgacgttccccgttgaggagttctacctcgaagatattatatcg
gagataaacttccacggatttaacccgggaccgaagaagcccaactaccgcgatcgtcaa
atgctgcagttcttcgacatgatcgatccgtacatccaaacaatccgcggtcaatacccg
gccaaagtgctccaaaccatcgccaacccgctgagcgagtctagtcagaacgatctgata
acggagctgatctaccacatctcagccaccaaaccagacggagcgatcctcgtgttctta
cccagtctagcgcaaatctccgacgtccaaaagcttctctccgcacatcgcgatctgtcc
cgcatgtccacccttatctacccactccactcgaaagtcccccaactcgaccaaaaagcg
gtcttctcgcgaccccaaaagggcacccgcaagatcatcctcgcaaccaacattgccgaa
acgtcgatcacaatcgacgacgtggtgtttgtggtcaacgccggtcgccacaagatcaac
atgttcgaggagggcgtctcatcgctgcgcgacgaatggatctcgatctcgaacgaaatc
cagcgcaagggacgcgcgggtcgtgttcagcccgggatctgctaccatctgtacacgcga
ggacggcgtaacgtgctgcttcagaatacaccgccggagattctgcgcgttgcgctggac
gaggtcatcttgaacatcaagatcctcgggttgggagaggctcgggcatttatgagtcat
ctgctcgatcgtccgacggacgacgtgatcgagacatcgctggagctgcttaaccgactg
aacgcgatcgacgatgatcagacgttgaccccgttggggtaccatttggcacgacttccg
atggacccgcggacagggaagatggttctgctgtcgagtatcttcagctgcgccgacccg
atctcgtcgatcgcggcaagtctctcgttcaaggacgcgttctacaaaccattcgggaag
gagaaggaggtcggaatggtcaagcggaagttcgccaaaggttaccacagcgatcatctg
atgttggcgaatgtgattgaacagtggaaagacctatcaggtcgggacgttcagcacttt
gcgtacaagaacttcctgaacttgggcacgctcaaccagctgtacaacatgaagcgccag
ttctgcgagtacctctactcggccaagttcctccagaacgcccaggttacgtccagggcg
aacaacctcaactcccacaacgacaagctgctgaaggcgatcatcggagccgggctgtac
ccgaatgtggcgttcgtgcggaaggtcatccggaaccggaactcaccagacgggcggtcc
attttaaatatcgaaggacagggcaggaccacaatgcatccttcgtcggtcaacagcacg
ttggcggattttgagtccaacttcgtggtgtactacgacaagcagaagatctccggctcg
ggactgaccattttcgacacgacggtggtgaatccgttcccgctgttcttcttcggcgat
aaccacgtcgagacggagggcgccctcaaatgcaacaaggaaacgtacgagctaatccag
gacctgcgcgccggcttcaacctctttctccagaagaagatctgcaacccgtcgccggtg
gactggtcgtcggacgagggcacgcttctgcgggcaatcatccagctaatcacgatcgat
gggcggtacgaggacgggttcgacgacgacggtggcgacgactttgggggagcttcgtcc
tcggagcagcggtggtaa
DBGET
integrated database retrieval system
