Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ018338
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Entry
CpipJ_CPIJ018338 CDS
T01079
Name
(GenBank) DNA-directed RNA polymerase I largest subunit
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CpipJ_CPIJ018338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqu03021
]
CpipJ_CPIJ018338
Enzymes [BR:
cqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CpipJ_CPIJ018338
Transcription machinery [BR:
cqu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
CpipJ_CPIJ018338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
EDS27174
UniProt:
B0XG16
LinkDB
All DBs
AA seq
1692 aa
AA seq
DB search
MTIDQNLEVSLDPTNLQFAVFSDEDIKRMSVTKIVTPRSFDDLGNSIPGGLYDAAMGPSG
RSEVCATCVKDMAQCEGHFGHIEICLPVFNPFFIKTVYNLLRISCNACHRLQMSDPLKEL
LQLQLQLVDAGYIVEAEELEMFKAKVCANPTEPLPEAVAYYSELLMNHPYNKLANTKNSE
AIRTSIVNSTLRDCVRKICISCKEAIQKVRVSNKRLVFSMTRAEMRAFYEKQGKTEIPDE
KTKATVKVVLAEEAQKSFRELYANDGKLLTLLFPIMATSSATMRHPVDLFFMNVIPVQPP
LVRPVRRVEGQEILEHPQTTILRNILMANAVLRSILVMSTKDDEALGAMDVEMKKVYESA
KGGTGLEKLYLAWIDLQNFVDQSLDINMSQEKQKGRGCGLKQIIEKKEGLVRMHMMGKRV
NYAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTPWNVAELRKMVINGPDGYPGANMV
EDSNGQVSRISGHNATHRESMAKTLLTPHSSNQQGVKIVHRHLLSGDVLLLNRQPTLHRP
SIMAHKAKILPGEKIFRLHYSNCKSYNADFDGDEMNAHFPQSELARSEAYNLVAVPHQYL
VPKDGTPLGGLIQDHIVSAVKLFIRGKFFNRDDYQQLVFQALSNHRGDIELLPPTILKPA
RLWSGKQIISTIVKNIIPRGMPHINMIGTSKLGNKHWQTAPPRPWTAGGTPLTGNQMSES
EVFIRNGELLVGILDKNHFGATPYGLIHCMYELYGGNCSTLLLSSLSRLFTYYLQWEGFT
LGVRDILVQKQADKKRTKIIQECRKIGHSAAAAALDLPPDVSPEVLNAKMEEAYAKDPKF
RAILDRQYKSALDPFNNQINEACIPDGLISKFPDNNLQLMVQSGAKGSTVNTMQISCLLG
QIELEGKRPPLMISGKSLPSFASFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLID
TAVKTSRSGYLQRCLVKHLEGLNVNYDMTVRDSDNSVVQFMYGEDGMDISKAQFIETSKQ
LRFLDLNRDAIVRPEITKKLVNEDDLNEQIKAHLKKVKAWNKKQGSLVQKRKISAFAKFS
AETAETLRESMNDPDRLKSKTGRTRLTEKLAKKWYKMDPEVKAKFLRKHPRCPDPLFSVF
RPDSCFGALTEHLEELVKNYENSQQTPQDMSQLMKIKNSGALAAPGEPVGLLAAQSIGEP
STQMTLNTFHFAGRGEMNVTLGIPRLREILMLASRNIKTPSMEIPFKPHKSAKKLEAIAE
RMRRTLNRVTVADVLEDIKVKSRLVLRPSRGMQHVIRFSFLPPDAYQHDYRVGPKEILHY
MSRNFFRHMFRIIFKSAKTKNVLIEIAQESSKKDAADSSGGGPEIDEQAVDSHEPDMSRL
KEADDGDASSEDDEDGNANEGDADATESRRKNKKSDDVGYESEEDDDDGEEDEMPNSPEG
EENAEGQAAKGEEEGEGGEEKDEALDVSDIQLNEDTEKMLVTKQSDMISDYTYDKEHFRW
VQVSFHMPMKYKDIDFTKILREISEKCVVWEVPNIRRAITFRQNDQLHLKTDGINVFAMT
KYAEILDLNRMYSNDIYAVAQTYGIEAASRVIVKEVQNVFKVYGIEINPRHLLLVADYMT
ADGTFKSLSRKGMEANVSPLQQISFESSIQFLKAATLKGNGDHLDSPSSRLMVGKLCKSG
TGSFGLYNQIKV
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgaccagaacttggaggtgagcctcgacccgacaaacctgcagtttgcggtg
ttcagcgatgaggacatcaagcggatgagcgtgacgaagatcgtgacgccgcgttccttt
gacgatttggggaattcgattccgggcggattgtacgatgcggccatgggtcccagtgga
cgttcggaggtttgtgccacctgtgtgaaggacatggcgcagtgcgagggtcactttggc
cacatcgagatctgtctgccggtgttcaatccgttcttcatcaagacggtgtacaacctg
ctgcgaatcagctgcaacgcgtgccaccggctgcagatgtcggacccgttgaaggaactg
ctgcagctgcagttgcagctggtggatgccgggtacatcgtggaagccgaggagctagag
atgttcaaggccaaagtgtgtgccaacccgacggaaccgttgccggaggcggtggcttac
tactcggaactgttgatgaaccacccgtacaacaagctggccaacacgaagaactcggaa
gcgattcggacgtcgatcgtgaatagtacgctgcgagattgtgttcgcaagatttgcatc
tcctgcaaggaggccatccagaaggttcgcgtgtccaacaagcggctggtgttcagcatg
acgcgcgccgagatgagggctttctacgaaaagcaaggcaagaccgagatccccgacgaa
aagactaaggccaccgtcaaggtcgtgctcgccgaagaggcccaaaagtcgttccgcgag
ttgtacgccaacgacgggaagctactgaccctgttgttcccaatcatggcgaccagcagt
gccacgatgcgccatccggtggatttgttcttcatgaacgtgattccggtgcagccgccg
ctggtccggccggtacgtcgcgttgaagggcaggaaatcctggagcatccgcagacgacg
atcttgcgcaatatcctgatggcaaacgccgtgctgagatcgattctggtgatgagtacg
aaggatgacgaagctttgggtgcgatggacgttgagatgaagaaggtgtacgagtcggcg
aagggagggaccgggttggagaagctgtacctggcgtggatcgatttgcagaactttgtc
gatcagtcgttggatattaacatgagtcaagagaagcagaagggacgaggttgtgggctg
aagcagatcatcgagaagaaggagggtctagtgcggatgcacatgatgggaaaacgtgtt
aattacgcggctcgtacggttattacgccggatccgaacattggagttgatgagatcggg
attccgatcacgttcgcgaagaggttgacttatccggtgccggttacgccgtggaacgtg
gctgagttgcgcaagatggtgatcaacgggccagacggatatccgggggcgaatatggtc
gaagattccaacgggcaggttagtaggatctctgggcataacgcaactcatagggaatcg
atggcgaagacgttgctaacaccgcacagttcgaaccagcagggcgtgaagatcgtccat
cgtcacttgctgagtggagacgtgctactgctaaaccgtcaaccgacccttcatcgtccc
agtatcatggcccacaaggccaagatccttcccggggagaagatctttcgactgcactac
tccaactgcaagtcttacaacgccgatttcgacggagacgaaatgaacgcccacttcccg
cagagcgagctggctcgttcagaagcctataacctcgtggccgttccccatcaatacctg
gttccaaaagacggaacccccctgggcggtttaatccaggatcacatcgtgtccgccgtg
aagctgttcatccgaggaaagttcttcaaccgcgacgactaccaacagctggtcttccaa
gccctaagcaaccatcgcggagacatcgaactgcttcctccgacgatcctcaaaccagcc
cgtctctggtccggcaagcagatcatttcgacgatcgtcaagaacatcattccgcgcgga
atgccccacatcaacatgatcggaacgtcgaagcttggcaacaagcactggcaaacggca
ccgccgagaccgtggactgccggaggcaccccgctcaccggcaaccagatgtccgagtcg
gaggtgttcataagaaatggtgaactcctcgtcggaatcctcgacaagaaccactttggt
gcaactccgtacggcttgatccactgcatgtacgagctgtacggcggaaactgctcgacc
ttgctgttgtcctcgctgtctcgactgttcacgtactatcttcagtgggagggtttcaca
ctgggcgttcgggacattctggtccaaaagcaggccgacaaaaagcgaaccaagatcatc
caggagtgccgtaagatcggacattccgcggcagctgccgcacttgacctcccacctgac
gtctcaccagaagtcctgaacgccaaaatggaggaagcctacgccaaggaccctaaattt
cgagcaatcctcgatcgccagtacaaatccgcgctcgatccgttcaacaaccagatcaac
gaggcctgcattccggacggactgatcagcaagttcccggacaacaatctgcagctgatg
gtgcaatccggagcgaagggttccaccgtcaacacgatgcagatctcctgtctgctggga
cagatcgagttggagggtaagcgacccccgttgatgatctctggcaagtcgctgcccagc
tttgccagttttgagacatccccgaagtccggaggattcattgacggacgcttcatgacc
ggaatccagccgcaggactttttcttccattgcatggcaggtcgtgagggtttgatcgat
accgccgtcaagaccagtcgttccggatatttgcagcgttgcttggtgaagcatttggag
gggttgaacgtgaactacgacatgaccgtgcgggacagtgacaacagtgtggtccagttc
atgtacggtgaggacgggatggacatctccaaggcccaattcatcgagacgtcaaagcag
ctacggtttttggatcttaatcgggacgcgatcgtgcgaccggagatcaccaaaaagctt
gtcaatgaggatgatctgaacgagcagatcaaggcgcatctgaagaaggtcaaggcctgg
aataagaagcaaggttcactggtacagaagcgtaagatttccgctttcgccaagttctcc
gccgaaaccgcggaaactcttcgcgaaagcatgaacgatcctgatcgtctaaagtccaaa
acgggtcgcacccgtctgacggagaaactcgccaaaaagtggtacaaaatggacccggag
gtcaaggccaaatttttgcgcaaacacccacgttgcccggacccccttttctccgtcttc
cgaccggacagctgcttcggtgccctcaccgaacacctcgaagagctcgtcaaaaactac
gaaaattcccagcaaaccccgcaagacatgtcccaactgatgaagatcaaaaacagtggc
gccctagctgcccccggcgaacccgtcggtctcctcgccgcccaatccatcggagaaccg
tccacgcagatgacgctgaacacgttccactttgccggtcgtggtgaaatgaacgtcacg
ctcggtattccgcgtcttcgtgaaatcctcatgctggcttccagaaacatcaaaaccccg
tccatggagatccccttcaagccgcacaagagtgccaagaagctggaagcgatcgcggag
aggatgcggcgcacgctgaaccgcgtcacggtggcggacgtcctcgaggacatcaaggtc
aagtcgcggctggtgttgaggccctcgcgtggaatgcagcacgtgattcggttttcgttc
ctgccgccggatgcgtaccagcatgactaccgggtgggcccgaaggagattctgcactac
atgtcgcgcaactttttccgccacatgttccggatcatcttcaagtcggccaaaacgaag
aatgtgctcatcgaaatcgcccaggaatcgtcgaaaaaggacgcagcagacagcagcggc
ggtggaccggaaattgacgagcaagccgtggacagccacgaaccggacatgtcccggctg
aaggaagccgacgacggggatgccagctcggaagacgacgaagatggcaacgcgaacgag
ggtgatgccgatgcaaccgagtcccgccggaagaataaaaagagtgacgatgttgggtac
gagagtgaggaggatgacgatgatggggaagaggacgagatgccaaattcaccggaaggg
gaggagaatgctgaaggacaggcggcgaagggtgaagaggagggtgaaggtggggaggag
aaggatgaagcgttggacgtttcggacattcagttgaacgaagacacggaaaagatgctg
gtgaccaagcagagtgacatgatcagcgattacacttacgacaaggaacacttccggtgg
gtccaggtcagcttccatatgccgatgaagtacaaggacattgatttcaccaagatattg
cgtgaaatctcagaaaagtgcgttgtctgggaggtcccgaacatccggcgagcgatcacg
ttccgtcagaacgatcaactccacctcaaaacggacggcatcaatgtgttcgccatgacc
aagtacgccgaaatcctcgacctgaaccggatgtactccaacgacatctacgccgtcgcg
caaacgtacggcatcgaggcggcctcgcgcgtcatcgtgaaggaagtccagaacgtgttc
aaggtgtacggtatcgagatcaacccgcgtcacctgctcctcgtcgccgactacatgacc
gcggacggaacgttcaagtcgctgagtcgaaagggcatggaggcgaacgtttcgccgctg
cagcagatttcgttcgaatcgtcgattcagttcctgaaggcggccacgctgaagggcaac
ggagatcacctggattcaccgtcgtcgcggttgatggtcggaaagctgtgcaagagtggg
actggttcgtttgggctgtacaaccagataaaagtgtga
DBGET
integrated database retrieval system
