KEGG   Capsella rubella (pink shepherd's-purse): 111831110
Entry
111831110         CDS       T02984                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111831110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crb03041]
    111831110
Spliceosome [BR:crb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    111831110
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_SPT8 Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 NBCH_WD40 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_EML WD40_like WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_DCAF4 WD_LRWD1 Beta-prop_pof12
Other DBs
NCBI-GeneID: 111831110
NCBI-ProteinID: XP_023640419
LinkDB
Position
Unknown
AA seq 184 aa
MYCLVKHEHNQQARDNKIKESKIFATLLKGMNGASCGLDSLARVRDLRTGRSILVFQGHI
RPVLSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYSIPAHANLVSQVKYEPQEGYFLAD
IAADSSCIATVSHDRTIKLWTSSENGEDEDEGKETRERNNGRRSLVSLFIFVPGQNKLYS
RFSD
NT seq 555 nt   +upstreamnt  +downstreamnt
atgtattgccttgtcaaacatgaacacaaccaacaagctagagataacaaaatcaaagag
agtaaaatatttgctacactattaaaaggcatgaatggagcttcttgtgggcttgattca
ctcgctcgggttagggatctccgcactggtaggagtattcttgtcttccaaggacacatc
agacctgttctctcagtgaatttctctcctaatggctatcacttggcatctggtggtgag
gataatcaatgccgtatttgggatctaagaatgaggaagtcattgtacagcatcccagct
catgctaacctcgtgtctcaagtgaaatatgaaccacaagaaggctacttcctggccgat
atcgctgcagatagctcatgtattgcaactgtatcacatgaccgcaccatcaagctttgg
acaagcagtgaaaatggtgaagatgaagacgaagggaaagaaacaagggaaagaaacaat
ggacgtagatctttagtttcgcttttcatatttgtgccgggacaaaacaaattgtactcc
aggttcagcgattag

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