Capsella rubella (pink shepherd's-purse): 111832193
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Entry
111832193 CDS
T02984
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
111832193
03036 Chromosome and associated proteins [BR:
crb03036
]
111832193
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111832193
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
111832193
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
111832193
NCBI-ProteinID:
XP_023644348
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MKSNNEEPPIRDDQVENRGKDDEEEDDEDDQYEYGDGFLVDSSEEEEEEEEEQRPCREKK
SGDRRKKDDDFSLHEDDYLLLEDNNVNFERKKYKRLKKSSEEEEDNTNNDDDNDDLSHFI
VDEDDGHGAHGVRKIKKSKQGTDSNDDDDDLSHFIVDEDDHGVRKTKKFKQGTSSNALRY
ANDLFGDPEELLKLRRKDLAYSQKIERKLEDEFEPMVISEKYMTERDDEIRKLDVPERMQ
ISEEAFGIAPMDESSIEEESNWIYARLVQEQGPCCLVNKDDIVRFLELYHVQKLEIPFIA
MYRKEQCPSLLESSDDGGDFNLDKKLETKWHNVLWMIQDLDRKWLLLRKRKTSLFGYYTK
RFEEEETFRSDLNKSLFESVIKSLKEAETEREVDDVDSKFNLHFPHGEIDEGQYKRPNRT
SQYSICSKFGIREFANNFGYSGEQLGLVLSLEKVLVDEIEDAKETPEEMALNYVCAMFED
PQAVLKGARHVAAVEISCEPLIKKYIRGIYMENAVVSTSPTPDGNVVIDSFHPFSSVKWL
REKPLRKFEGAQWLLIQKAEEEKLLQVTFKLPEDQMNKIISECSEHYLSVGVSKYAQLWN
EQRKLILEDAVHGFLLPSMEKEARSLLTSRAKARLLSEYGEVLWNKVSSGPYLRNANTNT
SDEEASPRVLACCWGPGNPETTFVMLDSSGELLDVLYTGSILWRSQDVNNKQRRKKDQDR
LSKFITEHQPDVVALGAVNLTCLRLKDEIYEVIFQIEQELASDLVDGIHVTSVVNADESL
PRLYENSRISSEQLPQQSGIAKRAVALGRYLQNPLAMIATLCGPGKDILSWKLHSLQDFL
DPDEKYEMVEQVMVDITNQVGIDINQATSHEWLFSPLQFVSGLGPRKAAFLQRSLVRAGS
IFLRKEMINHGIGKKVFVNAAGFLRIRRSGLACNSSQFVDLLDDTRIHPESYSLAQELAN
DVYAHDEDNAIEMAIEHVRDHPASLRKIVLDEYLRSKNQENKKETYSLIMRELTCGFQDW
RSLFKAVDADEEFYMFCGETKETIGEGRIVQVTVKKVTSGKAICLLDCGLRGILFKEDYS
DDGRDIVDLSNKLCEGDIVTCKIKSILKNRYHVILVCKESEMRKHKNLGDVDEYYHEEEQ
NNVLVKKEKAPKEKKQFKSRMIVHPRFQNITAERATEYLSDKNIGESIVRPSSRGLNHLT
LMIKIFDNVYANKEIIEGGKENKDILSLQRIGKTLRIGNETFDDLDEVMDQYVDPLVTHL
MTMINYRKFRTGTKSEIDDHLRAEKGENPKMVVYGFSVSHEHPGSFMLSYIRSANPHHEY
IGLYPKGFKFRKRMFGDLDKLAAYFKRHIDDPVHYYQ
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtaacaacgaagagccaccgatccgtgacgatcaagtcgagaaccgtggaaaa
gacgatgaagaggaagatgatgaagatgatcagtatgagtatggagatgggtttctagtg
gatagttctgaagaagaagaagaagaagaagaagaacagaggccatgtcgtgagaaaaag
agtggagatagaaggaagaaagatgatgactttagtcttcacgaagatgattatcttctt
ctagaagacaacaacgtcaatttcgaaagaaagaagtataaacgtttgaagaaatcttca
gaggaagaagaggataacaccaataatgatgatgataatgatgatttgagtcacttcatt
gtagatgaagatgatggtcatggtgctcatggagtgaggaagataaagaaatctaagcaa
ggaactgattcaaatgatgatgatgatgatttgagtcacttcattgtagatgaagatgat
catggagtgaggaagacaaagaaatttaagcaaggaactagttcgaacgctttacgatac
gctaatgatctgtttggtgatcctgaagaactgttgaagcttaggagaaaggacttggcg
tatagccaaaagatcgaaagaaagctagaagatgagtttgaaccaatggttatctctgag
aagtatatgacagagagagatgatgaaattaggaagcttgatgttcccgagaggatgcag
atatctgaagaagcctttggaatcgctcccatggatgaaagtagcattgaagaagagagc
aattggatttatgctcgattggttcaagaacaaggtccatgttgtttggttaacaaagat
gacattgtgagatttttggagctgtatcatgtgcagaagctagagataccgtttatagca
atgtaccgaaaggagcagtgtccgagtttattggagagttctgatgatggtggtgatttc
aatcttgacaagaagcttgagaccaagtggcataacgtcttgtggatgattcaagatttg
gatagaaagtggcttcttctacggaaacgaaaaacctctttgtttggttactatacaaaa
cgttttgaagaagaagaaaccttcaggtctgatctgaataaaagtctttttgagtcagtt
atcaagtctcttaaagaggctgaaacagagagagaagtggatgatgtagactcaaagttc
aacttgcatttccctcacggtgagatcgatgaaggacagtacaagaggccgaataggaca
tcgcaatatagcatctgcagcaaatttggtatccgggaatttgcaaacaattttggttat
agcggtgagcagttaggactggtgttgtctcttgagaaagttcttgttgatgagattgaa
gatgcaaaggaaacaccagaggagatggcattgaattatgtatgtgcaatgtttgaggat
cctcaagctgttcttaaaggcgctcgacatgtggctgcggttgagataagctgcgagccg
ttaatcaagaagtatattcgcgggatttacatggagaatgcagtagtctcaacaagtcca
acaccagatgggaatgtggttatagattctttccatccgttttcttcggttaagtggtta
cgggaaaagcctttgagaaagtttgaaggtgcacaatggcttctcattcagaaagcagaa
gaggagaagcttctgcaagtaactttcaagctccctgaggatcagatgaataagataatt
agtgaatgcagtgaacactatctaagtgttggtgttagtaagtatgctcaactctggaat
gagcagaggaaactgatacttgaggatgcggttcacggttttcttttgccgtcaatggag
aaagaagcaagatccttgcttactagcagagctaaggctcggttactttcggagtatgga
gaggttttatggaacaaagtgtcttcagggccatatctaaggaatgctaatactaatacc
tcggatgaggaagcgtcaccgagggtcttggcgtgttgttggggacctggaaatccagag
actacatttgtgatgctggattcatcaggagagcttcttgatgtgttgtacacgggatcc
atcttatggcgttctcaagatgtaaataacaagcaacgtagaaagaaggaccaagatcgt
ctttcaaagtttataacagaacatcaaccggatgttgtggctttaggagctgtgaatttg
acttgtttacgtctgaaggatgagatttatgaggtaatattccaaatcgagcaagaactg
gcgtctgatctagttgatgggattcatgttacgtcagtagttaacgcggatgagtctctt
cctaggctatacgaaaactctagaatctcaagtgaacaactacctcaacagtcagggatt
gcgaaacgcgcagttgctcttggacgttatctccagaacccattagccatgatcgcaact
ttatgcggtccaggtaaagatattttgtcttggaagcttcattctttgcaagattttctt
gatccagatgagaagtatgagatggttgaacaagttatggttgacataacgaatcaagtt
ggaatcgacattaatcaggctacgagccatgaatggcttttctctcctttacagtttgtt
tcagggcttggccctaggaaagctgcatttttgcagaggtctcttgttagagctggttcg
atatttctccgcaaggaaatgataaatcatgggattggtaaaaaagtatttgtaaatgca
gctggtttcttgaggattcgtaggagcggattggcttgtaatagcagccaatttgttgat
ctgttggatgatactagaatacatcctgagtcatacagtcttgcgcaagaattggcgaat
gatgtctatgctcatgatgaggataatgcgatagagatggcgatagagcatgtgagggat
catccagcttctttgagaaagattgttcttgatgagtatttgagaagcaagaaccaagag
aataagaaggaaacttatagccttatcatgagagaactaacctgtggtttccaggattgg
cggagtctgtttaaagcggttgatgcagatgaagagttttacatgttttgtggtgaaacc
aaagaaactattggtgaagggagaattgtgcaggtcactgttaagaaagtaacaagtggt
aaagccatatgtttattagattgtggattacgtgggattctgttcaaggaagattactct
gatgatggtagagatattgttgacttgtcgaacaaactgtgtgaaggagatattgttact
tgcaagatcaagtcgattttaaagaatcggtatcatgtgatccttgtctgcaaagaaagc
gaaatgagaaagcacaagaatcttggtgatgtcgatgagtactaccacgaggaggaacag
aacaatgtcctggtaaagaaagagaaagctcctaaagaaaagaaacagtttaagtctcgg
atgattgttcatcctcggtttcagaacatcactgctgagcgagcaacagagtatttgtct
gataagaatattggagaaagcattgttcgtccaagctctagaggactgaatcatctgact
ttgatgatcaagatctttgataatgtgtatgctaacaaagagatcatcgaaggtggcaag
gagaacaaggacattttgagcttacaacgtattggtaaaacattgagaattggtaatgaa
accttcgacgatctagatgaggtaatggatcagtatgttgatcctttggtaactcatctt
atgacaatgatcaactaccgtaaatttcggactgggacaaagtcggaaatagatgatcat
ctccgggctgagaagggcgaaaacccgaaaatggtagtttacggtttcagtgtatcgcat
gaacatccagggagctttatgttgtcttacatacgatccgcaaatccgcaccacgagtac
attggtttatacccaaagggattcaagttcaggaaaagaatgtttggggatcttgataag
cttgctgcttatttcaagagacatatcgatgatccagtccattactatcaatga
DBGET
integrated database retrieval system
