KEGG   Capsella rubella (pink shepherd's-purse): 17874545
Entry
17874545          CDS       T02984                                 
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17874545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crb03041]
    17874545
   03036 Chromosome and associated proteins [BR:crb03036]
    17874545
Spliceosome [BR:crb03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    17874545
 Complex B
    17874545
 Complex C
   U2 SnRNP specific factors
    17874545
Chromosome and associated proteins [BR:crb03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    17874545
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N Htt_N-HEAT_1 Vac14_Fab1_bd XMAP215_CLASP_TOG Adaptin_N
Other DBs
NCBI-GeneID: 17874545
NCBI-ProteinID: XP_023634156
LinkDB
Position
Unknown
AA seq 1106 aa
MADLDRDIAKTQEDRRKMEADLASPSNRDEEDSTGSLVAQRLASYTAPRSILNDLARPHN
KDEDDVGFRPRQTIAEREGDYRNRRLNRVLSPDRVAMAEKTPDPSEEEEAAKHQKDSSSS
KRRKRWDLIDEDGSAAKKAKAASSDWDSTDGGTPKRQRSRWDETPETMGSVTPMGGIHMA
TPTPGQLIFRGPIEERNIPFSDEELDAMFPKDGYKVLDPPASYVPIRTPARKLQATPTPV
ATPGYVIPEENRGQQYDVPQEVAGGLPFMKLEDYQYFGALLNEEKEEELSLDEQKERKIM
KLLLKVKNGTPAQRKTALRQLSYKAREFGAGPLLNKVLPLFMKPTLXDQERYLLAKVIGK
ILYKLGVMVRPYVHKILVVIEPLLIDEDYYARKQGREIIINLSKAAGLATMIAAMCPDID
NIDEYVRNTTARAFSVVASDLGVPALLPFLKVVCRSKKSWQARHTGIKIVQQIAILIGCA
VLPHLRSLVDIIEHGLSDEDNKVRTITALSLASLAEAAAPYGIKSFDSVLKPLWKGIRSH
RGKVLASFLKAIGFIISLMDARYASYYTKEVMFILIREFQSPDEEMKXVLKVVKQCVSTE
GVEPDYIRSGILPEFFKHFWIRRMALERRNYKQLVETTVEIANKVGVADIVGRVVEDLKD
ESEPYRRMVMETIDKVVTSLGASDIDARLEELLVDCILYTFQEQTSDDANVMLNGFSAVV
NALGERVKPYLPQICGTIKWRLNNKSAKVRQQAADLISKTAVIMKQCGEEQLMGHLGVVL
YEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLVPRLTPILKNRHEKVQENCIDL
VGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNSFGYIAKTIGPQDVLATLL
NNIKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVQELNVQNGVLKSLSFLFEYI
GEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPN
IFETSPHVINAVMEAIEGMGIALGAAVILNFCLQGLFHPARKVRQVYWKIYNSPYIGAQD
TLVAAYPVLEDAQNNVYSRPELTMFV
NT seq 3321 nt   +upstreamnt  +downstreamnt
atggctgatctagatcgagatatcgccaaaactcaagaggatagacggaagatggaagca
gaccttgcttctccctccaaccgtgatgaagaagactccactggttcccttgtggctcag
cggcttgcgtcttacactgctcctaggtcaattctcaacgacctcgctcgtcctcacaac
aaagatgaagacgatgtcgggtttagacctaggcagactattgcggaacgtgaaggtgat
tataggaataggagacttaatcgtgttctttctcctgatagagttgctatggccgagaag
acgccggatcctagtgaggaagaagaagctgcaaagcatcagaaagattcttcttcttcc
aagaggagaaagaggtgggatctcattgatgaagatggttctgctgcaaagaaagctaaa
gcagcaagttcagattgggactcaactgatggtggcaccccaaagcgtcaacgttcaagg
tgggacgaaactccggaaactatggggagtgttacacctatgggtgggattcatatggct
actccaactccgggtcagctaattttccgtggtccgatcgaggagagaaatataccattc
tctgatgaagagcttgatgccatgtttcctaaagatggatacaaggttttggatccgcct
gcttcatatgttccaataagaacccctgcgaggaaacttcaggcaaccccgacacccgtg
gcaactcctggctatgtaattcccgaggaaaaccgcgggcaacagtatgatgtgccgcaa
gaagttgctggtggtttgccgtttatgaaactagaggattatcagtattttggagctttg
ttgaatgaagagaaggaagaagagctatctcttgatgagcagaaagaacgcaagataatg
aaactgttgttaaaggttaaaaacggaacacctgcgcagaggaaaacagcattgaggcaa
ctaagttacaaggctcgtgagtttggtgctggtcctttgttgaataaagttttgccattg
ttcatgaaacctactttgtaagatcaagagaggtatcttttggccaaagtgattggtaaa
attctttacaaacttggtgtgatggtaaggccttacgtccacaaaatccttgttgttatt
gagcctttgttgattgatgaagattattatgctcgtaaacaagggagagagattattata
aaccttagcaaagcagctggtttagccactatgattgcagctatgtgtcctgatattgac
aacattgatgaatatgtgaggaacacaacagcgagagcttttagtgttgtggcttcagat
cttggagtcccagcactgttgcctttcctaaaagttgtgtgccggagtaagaagtcatgg
caggcacggcacactggaattaagattgttcagcagattgctatactaattggctgtgcc
gtgctacctcacttaaggtctttagttgatattattgaacatggtctcagtgatgaagac
aacaaggttaggactattacagctttgtcactggcttctcttgctgaagctgctgctcct
tatggtattaaaagctttgattctgttctgaagcctttgtggaaaggtattaggtcgcac
cgtggtaaagttttagcttctttcttgaaggcgattggttttatcatctctttgatggat
gctagatatgcgagctactatacaaaagaagtgatgtttattttgattcgtgagttccag
tctccagatgaagagatgaagnatgtcctcaaggtggtgaaacagtgtgtgagtacagaa
ggtgtcgaaccggattatatccgcagtggtattctgcctgagtttttcaagcatttttgg
attaggagaatggctctggaaaggagaaactacaagcagcttgttgagactactgtggag
attgcaaacaaggttggtgttgcagatattgtgggaagagttgttgaagatctcaaggat
gagagtgaaccatatcgacgtatggttatggaaactattgacaaggttgtcacaagctta
ggagcatctgatattgacgcgaggttggaggaacttctcgtagattgcattctttatact
ttccaagaacagactagtgacgatgctaatgtgatgcttaatggtttcagtgctgttgtg
aatgcgcttggtgagcgagtaaagccttatcttccccagatctgtggtactattaagtgg
aggttaaacaataagagtgcaaaggtgagacaacaagctgctgatcttatttctaaaact
gctgttattatgaaacaatgtggagaggaacagttgatgggacatcttggtgttgtcttg
tatgaatatcttggagaagagtatccagaagttttgggatctattcttggagctttgaaa
gctatagtaaatgtgattggtatgacaaagatgactcctcctattaaggatcttgttcca
agactgaccccgattttaaagaacaggcatgagaaagtgcaagagaattgtattgacttg
gttggtcggattgcagatcgtggtgcagagtttgttccagccagagaatggatgagaatc
tgttttgagcttcttgaaatgctcaaggctcataagaaaggtattcgccgtgccacggtc
aacagtttcgggtatattgccaaaactattggaccacaagacgttcttgccactttgctg
aacaatatcaaagtacaagaacgtcagaatcgtgtttgtactacagtcgcgatcgccatt
gttgctgaaacatgctctcccttcacagtcttacctgctttgatgaatgagtaccgtgtt
caggagctaaacgttcaaaacggtgttctgaaatctctttcctttctcttcgagtacatt
ggagaaatgggcaaagattacatatatgcagtcacaccgttgctcgaggacgctctcatg
gatagagatttggttcatagacaaactgctgcttcagccgtgaaacatatggccttaggt
gtagcaggtttgggatgtgaagatgctttggttcacttacttaactttatttggcctaac
atttttgagacatctccccatgtcattaacgctgtgatggaagccattgaagggatggga
attgcattaggtgcagctgtaattctcaacttttgtttgcagggtttgtttcatccggct
cgtaaagtccgccaagtttactggaagatttacaattctccatacattggtgctcaggac
acacttgttgctgcctacccggttcttgaagatgcgcagaacaacgtgtatagccgacca
gagttaacgatgtttgtgtga

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