Capsella rubella (pink shepherd's-purse): 17874788
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Entry
17874788 CDS
T02984
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17874788
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17874788
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Ortholog
Paralog
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
17874788
NCBI-ProteinID:
XP_006280540
UniProt:
R0GQH2
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All DBs
Position
Unknown
AA seq
417 aa
AA seq
DB search
MASTQVLVFLTSALLLSLFFIGVDSTRSNETWHEHAVENPDEVAAMVDMNIRNSTARRRL
GYFSCSTGNVIDDCWRCDRRWQLRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVN
PKPGTLRHAVIQEAPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQFV
TNIIIHGIHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADG
LIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRCR
HGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGQWQWRHWN
WRSEGDLFLNGAFFTRSGSGRGASYARASSLGAKSSSLVGTITYNAGALNCRSGRRC
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacgcaagtacttgtcttcctcacttctgcattactcctatcattgttcttc
attggtgtcgactccaccaggtctaatgaaacatggcatgaacatgcagttgagaatcca
gatgaagtagctgccatggttgacatgaacattcggaacagtacagcaagaagaagacta
ggatacttctcatgctctaccggaaacgtaatcgacgactgttggcgttgtgaccggaga
tggcaactccgtcgaaaacatctagccaattgcgcgatcgggttcggccgcaacgcgata
ggcggccgagacggtcggtactacgtagtaagtgacccaaacgacgataacccggttaac
cctaaaccgggaacgttacgtcacgcagtaatccaagaagcgccactatggatcgtattt
aaacgtgacatggtcattacattaaaacaagaactgatcatgaacagtttcaaaaccatc
gatggtcgtggcgttaacgttcacatagctaatggtgcatgtctcacgattcagttcgtg
actaatattatcatccatgggattcatatacatgattgtaaacctactggtaacgctatg
gttagaagctctccttcacattatggttggagaactatggctgatggtgatgggatctct
atctttgggtctagtcatatttggattgatcataactcgctttcgaattgtgctgatggg
cttattgatgctgttatggcttctactgctattactatctccaacaattacttcacacat
cacaatgaggttatgttattggggcatagtgatacgtacactagagataaggttatgcaa
gttacaattgcttataaccattttggtgaaggtcttatccagagaatgcctaggtgtagg
catggatattttcatgtagttaacaatgactatacacattgggaaatgtatgcgatcggt
ggcagtgcgagtcctaccatcaacagtcagggaaatagatatctcgccccgagaaaccgg
tttgcgaaagaggtgacaaagagagactatgcagggcaatggcaatggaggcattggaat
tggagatcagaaggagatcttttcttaaacggagctttctttacacgttctggatcagga
cgtggagctagctacgctagagcttcaagtttaggagctaaatcgtcatctcttgttgga
accatcacctacaacgccggtgctcttaattgcagaagtggtcgtcggtgttaa
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