KEGG   Capsella rubella (pink shepherd's-purse): 17874940
Entry
17874940          CDS       T02984                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03013  Nucleocytoplasmic transport
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17874940
  09122 Translation
   03013 Nucleocytoplasmic transport
    17874940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crb03019]
    17874940
   03041 Spliceosome [BR:crb03041]
    17874940
Messenger RNA biogenesis [BR:crb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     17874940
Spliceosome [BR:crb03041]
 Complex C
  Other components
   EJC/TREX
    17874940
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    17874940
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st eIF2A NBCH_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_DCAF12 TRM82_WD WDR90_beta-prop_4th Tricorn_2nd PAC11 Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_ACSF4 TP_0598_N CNH Beta-prop_WDR11_1st PROPPIN DUF7099 WD_LRWD1
Other DBs
NCBI-GeneID: 17874940
NCBI-ProteinID: XP_006282164
UniProt: R0F0H5
LinkDB
Position
Unknown
AA seq 314 aa
MEETIPFKSLQSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLE
LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPLHKRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSL
KPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISF
NYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYN
TDEGVFRIFGFDST
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaggagacgattccttttaagagtttacaaagcagagaatatcaaggtcacaagaag
aaggtacattctgtagcttggaattctaacggaacaaagcttgcttcgggttctgttgat
caaactgctcgcatttggaatatcgaacctcacggtcatagtaaagctaaggaccttgaa
ttaaagggtcatactgatagtgtggatcagctatgttgggaccccaaacattcagatctt
gttgctactgcctctggggataaaagtgttcgtctctgggatgctcgcagtggaaaatgc
acacaacaggcagaacttagtggagagaatataaacattacctacaaacctgatggaaca
catgttgctgttggtaatagggatgatgagcttaccattctggatgtccggaagtttaaa
cctctgcacaaacgaaaattcaattatgaggtaaatgagattgcttggaacatgccaggg
gattttttcttcttgactactggacttggcactgttgaagttctttcatatccatctctt
aaaccacttgacactctcacagcccacacagccgggtgttattgcattgcaattgatcct
aagggaagatattttgctgtagggagtgcggattctttagtcagcctttgggatatctca
gacatgctttgtttaagaacatttaccaagcttgagtggcctgtcaggacaataagcttc
aactattcgggagagtatattgcttcagccagtgaagatttattcatagatatagccaat
gtccaaaccgggcggacagtgcatcagattccatgtcgtgctgccatgaatagcgttgag
tggaatcccaaatacaatttattagcatatgcaggtgatgacaagaatcccaagtataat
actgatgaaggtgtattcaggatatttggttttgacagcacatag

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