Capsella rubella (pink shepherd's-purse): 17875888
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Entry
17875888 CDS
T02984
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17875888
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17875888
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Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17875888
NCBI-ProteinID:
XP_006279784
UniProt:
R0EUB2
LinkDB
All DBs
Position
Unknown
AA seq
392 aa
AA seq
DB search
MSIVCTIFLFVINVSPAFAFAVPKPPVVRLLSTSVTSNSTDSCSSANGNPIDECWRCDEK
WKDNRKNLADCAVGFGRDSIGGRAGEFYIVTDSGDDNPLNPSPGTLRYGATQDQPLWIIF
DRDMVIKLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPAKRSA
LSSLGGFSDGDGISIFESRDIWIDHCTLERCYDGLIDAVNGSTDITISNSYMLNHNEVML
LGHSDEYSGDQDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYREWKMYAIGGSANPT
IFSQGNVFIASNNQFTKEVTKRESADGDDEWKEWNWKSEGDEMVNGAFFTPSGEEDSPSY
AKMSSMVARPASLLKTTHPSVGVLSCKIDQPC
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattgtatgtacaattttcttgtttgtaataaacgtttctcctgcgtttgcgttt
gcggttcctaaaccaccagtcgtaaggctactatcaacatcagtgacatcaaactcaaca
gattcttgctcatcagcaaatgggaatccaatcgacgaatgctggaggtgcgacgagaaa
tggaaggacaaccgcaaaaacctcgcggattgcgcggttggattcggacgggactcgatt
ggcggtagagcaggagagttctacattgtaactgattcaggagacgacaaccctctaaac
ccatctccaggtacgttacggtacggtgcaacacaagatcaacctctatggattatattt
gatcgagacatggtaattaaactaaaacaagatctccaagtagcatcatataaaaccatt
gacggtagaggaaacaacgtgcaaatagcttacgggccgtgtttaactttatataaagtt
agtaatataatcataaacaatctttatatacacgattgtgttccggccaaacggagcgcc
ttatcgtcgttgggagggttctcggacggagatgggatctcgatattcgagtctcgcgat
atttggattgatcattgtacgttagagaggtgttacgatgggcttattgatgcggtgaat
ggatcaacggatataacgatttctaatagttacatgttgaatcataatgaagtcatgctt
ttgggtcatagtgatgagtattctggtgatcaggatatgcgtgttaccatcgcctttaac
tattttggtgaaggacttgtccagaggatgccgaggtgtaggcatggatattttcacata
gtgaataacatttatagagagtggaagatgtatgctattggtgggagtgctaatccaacg
atctttagtcaaggaaatgtattcatagcttcaaataaccagttcacaaaggaggtgaca
aagcgagagagtgcagatggagacgatgaatggaaagaatggaattggaaatcagaagga
gatgaaatggttaacggagctttctttacgccgtcaggggaagaggattctccgagctat
gcgaaaatgtcgagtatggtagctcgaccagcttcactcctcaagactacacatccatca
gtaggcgttcttagttgcaaaattgaccaaccttgttaa
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