Capsella rubella (pink shepherd's-purse): 17876060
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Entry
17876060 CDS
T02984
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crb03036
]
17876060
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Meiosis-specific proteins
Others
17876060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBD
Motif
Other DBs
NCBI-GeneID:
17876060
NCBI-ProteinID:
XP_006279891
UniProt:
R0G8B8
LinkDB
All DBs
Position
Unknown
AA seq
1606 aa
AA seq
DB search
MRTRFLNIDYFSTPPSQVFETLGFLNLPAPDNFPAPLVCDGVEERLRFSSIENVCIPIGN
LPIEAALSKFLSDVVPDRVSVDYEVFEIDDSSLGDYLSDKKNDGDAIEEKATLNFIQLET
PELDFETENKLLSTSEDHLQCFSEVLELENEPVKYDGSDIILQNSKEIQEQIYSVDYIPS
DYFTENDTSVAENECFRKNQPWFKDFRFPLLEVDEVNLSELSSLSALDKVFTVLETIETQ
DTNAGSSLIINSKELIGSKDYAILDILSTDCYLNKSGQSDVVPEDEFSIMDVVTILEISN
AEENFQFEQQGKVAVPVTFEEFQILDVEIYEVFDIFLGLQKAIEPEICYGMFSKEMNFKN
FDELVVSSELAFTDDAFKSLPTPILHDYEMIRSLDLIYEDVLSKIKPQSLSASNDIYLPW
NLLEERNHNHCDYPFEEIVTCNIDFNWESSEGDKWVYDFIFSEDAFCEPLVEKCTEPFFG
ISTLNEHAPLDTSHGSVKSPFRNTGARNCGGDDNAKKATLLFKSMSAFDDLTFFMDPQKA
MIEDNLDSRVQADKSANHKFMSTDSKAPCLSGGMHPNPQTEEMILHSVCPSENILALVGD
FVRSYLTLVKDESANLSEDKLKLLSISKGKLIDSIRKANVRKTQVADDKSFMFALLVAIK
QMTWYMCFFGIHVAYLYLNKLCRSSVPMKLGLHTLYSAVETEHKSDETNVTRSHPSLAVM
QGILQSEFSRGNSKALLLAEKVFWSSVKRLLMSMGLSYSELNSPSPSDNRPNVHEAPGFK
TIELGSLPFSDCLIISYEQISPSFPVENFSVIVEYGGPNASPRFSFPSKLDSFPCFHFIK
LELDMSSACGQLCAGVTVPYTLKMTKGDEVETKTGWLEELLNFVPLENVCYAGSSETTNE
SEFISMPQESERKSGKIEPEFLTDQKSVIVVNTKTVDKEMIISRRSTYQKVLAMEKEGVQ
VVERDSDLPVDLMLSPAVCLLWYDCEYVSKKSTATIGTSSSSLSWIGDIATDVLTSLSFS
FSSCIMLFEGEPTFLATIMDSSDELYAAAGSLGISLQLFFSSSADLTDEVILRCIKFSVK
LSKLHVKMSESESLAESFLTKCPSVNPLTAQVILSSSGSLLEFMKLPHSSKVERMQKYHV
PVESVDLFSSLCRYGAREDSKSVMTDSSSSVSSGPDSDTHHVSVHSGSKKNHHRAGKNRI
DMDDLIHFSPSTECADTQLKPSGDFQLDDSWSSRDHEIFDFDPVTEFDDAPFKPSGIIHH
SDSWPVKDPARFDKKSGPGSSSKDPFWEKDLPDFSVEDSLPGIPELEDWSFPSKDEFRSQ
NRGFKLPVMGNFNLHDNRNSESFVADYKGEVIDGADKFLEEEFPPSPGYNRFAPIVSDVD
EDELPRKSKSTRKLSFFGSLQPNFPKAADIDSSSERFAPEKDLKYDNNASLRGFVDNYPA
KRQRTLLEEVLTRRSAVPTSDLPFREEISHFGGSPLSNAIHSSNPVQGSPWTIEFLNRVR
ERSRSRKEQQSLPSYVPPSSLETPGNIKKASTKRKSPSILEFFKYKGGNKLQAEKKQKRS
KNSSASPKTDRFYSPLKSCTPIDKRAKQSLSFSGNGTGGQTKLVWK
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgatttcttaatatcgattacttctctactccaccttctcaggtatttgaa
accctaggcttcctcaatcttccggcgcctgataatttcccggcacctctcgtctgcgac
ggggttgaagaacgtcttcgatttagctcaatcgaaaatgtctgtatcccgatcgggaat
ttgcctattgaagctgctttgtcgaagttcctttccgacgttgttcccgatcgcgtcagt
gtggactatgaagtctttgaaatcgacgactcttcgctcggagattatttatcagacaag
aagaatgacggagatgccattgaggagaaagctacacttaactttatccagttggagact
ccggagttggattttgaaacggagaacaagctcttatccacgagtgaagaccatctccaa
tgtttctctgaagttctagagcttgaaaatgagccggttaaatatgacgggtcagatatt
atcctgcagaactcaaaggaaattcaggaacagatttattctgttgattacattccgtct
gattactttacagagaacgacacttcggtagcagaaaatgaatgcttccgcaagaatcag
ccatggttcaaagatttcagatttccccttctagaagtggatgaagtaaatttgagcgaa
ctatcaagcttatctgcgcttgataaagtatttactgttcttgaaacaattgaaacccaa
gacactaatgcagggagttctctcattatcaattctaaggagcttattggctctaaggat
tacgctatattggatatcctctctacagattgctatttgaacaagagtggccaatctgat
gtggttccagaggatgaattttctataatggatgtagtgactatcctggagatatcaaat
gctgaggaaaactttcagtttgaacaacagggaaaggtggctgtcccagtaacttttgag
gaatttcagatcctggatgtggaaatatatgaggtttttgatatcttccttggtcttcaa
aaagccattgaaccagaaatatgttacgggatgttcagtaaagagatgaacttcaagaat
tttgatgaattagttgtcagttctgaacttgctttcacagatgatgccttcaagtctctg
cctactcctatattacatgattatgagatgataagatctctggatctcatttatgaggac
gtgttgtcaaagatcaagcctcaatccttgtctgcctcaaatgacatatacttgccctgg
aaccttctcgaggaaagaaaccacaaccattgtgattatccatttgaagaaatagttaca
tgcaacattgattttaactgggaatcttcagaaggagacaaatgggtttatgatttcatt
ttctctgaagatgctttctgtgagccacttgtagagaaatgcactgagcctttctttggt
atatctacccttaatgagcatgcccctcttgatacttcccatgggtcagttaaaagtcct
ttccgaaatactggagccaggaattgtggaggggatgataatgctaagaaggctacactg
ttgttcaaatcaatgtctgcttttgatgacttaacatttttcatggatcctcagaaggct
atgattgaagataatctcgactctagagtccaagctgataagagtgccaaccataaattt
atgtctactgactcgaaggctccatgtttatctggtggcatgcacccaaacccgcagaca
gaggaaatgatacttcacagtgtgtgtccttcagaaaatattctggccctagtaggggac
tttgtgaggagctatttaactcttgtgaaggatgaatcagcgaatttatcagaagataaa
cttaagttactcagcatatctaaaggaaagcttattgacagcataagaaaggcaaatgtc
cgtaaaacacaggtggcggatgataagtccttcatgtttgcattactagtagcaattaaa
cagatgacatggtatatgtgtttcttcggtatccatgtggcatatctctatcttaacaag
ttatgtcgaagctcagttcccatgaagctaggattgcacaccctctactcagcagttgaa
acagaacataaatcagatgagacgaacgtcacaagatcacatccatcactagctgttatg
caggggatcttacagtcggaattttcccgggggaactccaaagcattacttttggctgag
aaagttttttggtcctcggtgaagagactactaatgtccatggggttatcttacagtgag
ctcaatagtccctcaccaagtgacaatcgaccaaatgttcatgaagccccggggtttaaa
accatcgaacttggttccctgccgttttcagactgtctaattatctcttacgagcaaata
tctccatcttttcctgtggagaattttagcgtcattgtagaatatggaggtccaaatgcc
tcgcccagattttcttttccttcgaagttggattcctttccttgcttccatttcataaaa
cttgagctggatatgtccagtgcatgcgggcaactctgcgcaggtgttacagtaccttat
actctcaaaatgacaaagggagatgaagttgagacgaaaactgggtggttggaagaattg
ttgaactttgttccacttgaaaatgtgtgttatgcaggatcttcagaaaccacaaacgaa
tctgaatttatctccatgcctcaagaatctgaaagaaaaagtgggaaaattgaaccggaa
tttctaactgaccaaaaatctgtgattgttgtgaacacaaaaactgttgataaagagatg
atcatatcccgaagaagtacataccagaaggtgttagcaatggaaaaagaaggagtgcaa
gttgtggagcgcgattcagatctacctgtggatctgatgctaagtcctgcagtttgccta
ctctggtatgattgtgaatatgttagtaagaagtcaactgcaactattggtacttcttca
agctcactttcatggattggagatatcgctaccgatgttttgacgtcattgagtttcagt
ttcagcagctgcattatgctttttgagggggaacccaccttcctagctacaataatggat
tcctctgatgaactgtatgcagcagctggtagcctgggaatcagcttacaactgtttttc
tcatcgtcagctgatttaactgatgaagttatattgaggtgtatcaaattttctgttaag
ttgtccaaactccatgtcaagatgtccgagtcagaatctcttgcggaatcatttctcacc
aaatgtccttccgtgaatccacttacagctcaagtaattctgtcatcttctggatcactt
ctcgaattcatgaagctcccacatagtagcaaggttgaaaggatgcaaaagtatcatgta
cctgtagagagtgttgatctatttagttcactatgcagatacggtgcgagggaagattcc
aaatctgtaatgacagacagctcttcttcagtatcttctggacctgactcagacacacac
catgtcagtgttcattctggttcgaaaaagaatcaccatagggctgggaaaaataggata
gatatggacgacttgattcatttttccccgtcgacagaatgtgctgatacacagctcaag
ccttcaggggatttccaacttgatgattcttggtcatctagggatcatgagatatttgat
tttgatcctgtcactgaattcgacgatgcaccttttaaaccttctgggatcattcatcac
agtgactcttggccagttaaagatcctgcgagattcgacaagaagtcaggacctggttca
tcatcaaaggacccattttgggaaaaagatctacctgacttttcagtggaggacagtctt
cctggaattcctgaactagaagattggagtttcccaagcaaagacgaattcaggagccag
aacagaggttttaaacttccggtgatgggaaattttaacttacatgacaataggaactca
gaaagtttcgttgcagactacaaaggtgaagtaattgatggagctgataagtttctcgag
gaagaattcccgccttctcctggttataataggtttgctccaatagtttctgacgttgat
gaagacgaacttccaagaaaatcaaaatctactaggaagttatctttctttggatctctc
cagcctaacttcccaaaagcggctgacattgactcgagttctgaaagattcgcccccgag
aaagatctaaaatatgataacaatgcttctttgcgtggctttgttgataactatccagca
aaacgccagaggacccttttggaggaggtcttaacacgaagatcagcagttccaacgtca
gaccttccttttagagaagagatatcacattttggtggatctccactatcgaacgcaatc
cattcttcaaatccagtacaaggttctccttggacgattgagtttcttaacagagttcga
gaaagaagcagatcaaggaaagaacaacaatctcttccttcttatgtccctccctctagc
ttggagactccagggaacataaagaaagcaagtaccaagagaaagagtccttccatacta
gagtttttcaagtataaaggaggtaacaaacttcaagcagagaaaaagcagaagaggtca
aagaattcttcagcctcgccaaaaaccgacagattttactctcctctcaagtcatgtaca
ccaattgataagcgagcgaaacagtctctatctttctcagggaatggaactggaggtcaa
acaaaactggtatggaagtaa
DBGET
integrated database retrieval system
