Capsella rubella (pink shepherd's-purse): 17876299
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Entry
17876299 CDS
T02984
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crb03009
]
17876299
04121 Ubiquitin system [BR:
crb04121
]
17876299
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
17876299
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
17876299
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
17876299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
FANCL_C
zf-ANAPC11
zf-RING-like
ParcG
zf-C3HC4_2
zf-C3HC4
C1_1
RINGv
Motif
Other DBs
NCBI-GeneID:
17876299
NCBI-ProteinID:
XP_023635520
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MGKPKGDAARSKARPSSSSLAASLLPSGSAAAAVGFGGYVGSSKFETSISNEDSAPLDLD
SEVAQHLQRLSRKDPITKIKALASLSELIKQKKGKEILPIIPQWTFEYKKLILDYNRDVR
RATHDVMTNVVTGAGRDLAPHLKSIMGPWWFSQFDLAFEVSQAAKSSLQAAFPTQEKRLH
ALNLCAAEIFAYVEENLKLTPQNLSDKALASDELEEMYQQMISSSLMALATLLDILLREP
DKAVSANINSESKLFSKARAVAISTAGKLFSFHKCFLNFLKSGSPSIRSATYSLLSSFIK
NVPEVFGEGDIRCLAPALLGVFRENNPTCHSSMWEAVLLFSRKYPQSWVYLNVHKSVLNH
LWQFLKNGCYGSPRVSYPALILFLEVIPIKSIEADKFFVNFFKNLLAGRSICDSSSADQL
SLLRATTECFLWGLHNASKYCVGPNSIHDLQVDLIDKVLVKILWADFFELSKGSIPPIQR
KSAETLGMGNSVNYRQELGRCIVEILSGINLLEQNLLSFFCESVQESFLNMLQQGNLEIV
AGSMGKMIDFLLLLERYSVLEGESWPLDQFMGPLLFKAFPWIRSSELLDGVKLLSVSVSV
FGPRKIVPILINDVETSTLISVEKGRDMSPEKFIKVFQEIFIPWSMDVSDSSTAARQDLL
LSLLDDECFTQQWSDVIFYVFNQHRQGCNNLAAMKVLLEKARGEITKRSSGQLNQRVGSL
PEHWHHRLIDSTAISLVHSSSGTTTSAAQFLCSVLGGSTEDCNISFVSRSSLVLIYKGIL
GKLLSFIKQSPLCSVNDICSSLTVEAIEFDLSSTVDVIVVAKFAVEVINGSFFSLKAMNQ
DATLLSTILSSILIIDLESRITSLMDDTQYESKEKRKDRNLVCDFIHAVYSKMDNHFWKS
IDYDARKSSAIILVQSLRSIVLLEDSLQPCELTLLCASRMTEVLEYLSLDQSDKEKICSL
LLLESDIWPMWVSPSTSASINTHGRPVHLCELRKSRSERFVSFINNLILKMGIHRFLVGR
KDDGFSSQAWLSVEILCTWEWPGSNVQTSFLPTLVSFCKSEPSSGSLLNSIFDILLNGAL
VHGEDEIESLGNMWVDFNNNIEDIVEPFLRALVSLLHTLFKEDLWREEQAMVAFKMLTDK
LYIGEETSTKCLRIIPFIMSILISPLRTKIKSGVSGKDILLPLEVLFRNWLEKTLSFPPL
VFWQSGEDMQDWFQLVISCYPVSKKAEEAKELQRHVSNEERTLLLDLFRKQKQDPVASSV
VTQLPAVQILLARLIVIAVSYCGNDFNEDDWDFVFSNLKRLIQSAVVVMEETSENVNDFI
SGVSSVEKENDTLEGLGHIVFISDPSISNAQNALSAFSLLNALVKHKSTEGEDNLKSLAD
ETWDPVKDRILEGVLRLFFCTGLAEAIAASYSAEAALIVASFRVDHLQFWELVAQIVVDS
SPRARDRAVRAVEFWGLSKGAISSLYAMMYSSNPIPSLQLAAYIVLSTEPISRLAIVADG
NAPLNDESLNDQDSINTGLPSEEKLRLRDEVSCMVEKLNNELLDTDLTAPERVQTFLAWS
LLLSHVNSLPSLTQGRERLVQYIEKTANPLILDSLFQHIPLELYMAHSLKKKDGDIPSEL
SVVASAATHAIMTGSSLSTVESLWPIETGKMASLAGAIYGLMLRVLPAYVREWFSEMRDR
STSSLIEAFTRSWCSPTLIKNELSQIKKADFNDESFSVSISKAANEVVATYTKDETGMDL
VIRLPVSYPLRPVDVNCTKSIGISDAKQRKWLMSMQLFVRNQNGALAEAIRIWKRNSDKE
FEGVEDCPICYSVIHTANHSLPRRACVTCKYKFHKACLDKWFYTSSKKLCPLCQSPC
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacccaaaggagatgctgcaaggagcaaagctcgtccatccagcagcagcttg
gcagcttctctgttgccgtctggctctgcagctgcagccgtaggttttggcggctatgta
ggtagctctaaattcgaaacttctatatcaaacgaagattctgctcccttggatttggat
agtgaagttgcccagcacttgcaacgtctttcaaggaaagaccctataacaaagattaaa
gcccttgcttccctgtcagaactgattaagcaaaagaaagggaaggaaattttgccaata
atcccacaatggacatttgagtacaagaagttgatactagactacaatagagacgttcgg
cgagctacacatgacgtcatgactaatgttgtcactggtgccgggagagatttagcacct
catctaaagtctataatggggccctggtggttttcgcagtttgatttggcatttgaagtt
tctcaagcagcaaagtcatctttgcaggcagcatttcctacccaggaaaagagattgcac
gccttgaatttatgtgcagctgagatttttgcttatgtggaggaaaatctcaaacttaca
cctcaaaatttatctgataaagcacttgcttcagatgaattagaagaaatgtaccagcag
atgatatcatcatctctgatggcattggctacacttctagatatattgctccgcgaacct
gataaagctgtctctgcaaacattaattctgaatctaaacttttctcaaaggctagggca
gtggcaatctccacagctgggaagttgttctctttccataaatgctttctgaactttcta
aaatctgggagccctagtattcggtcagccacttattctttattaagcagcttcattaaa
aatgttcctgaagtctttggcgaaggcgatatcagatgtcttgcaccagctctgcttggt
gtttttcgggaaaataatccaacctgccactcatcaatgtgggaggctgtattgctgttc
tctagaaaatatcctcagagctgggtctacctaaatgttcataaatctgttctaaatcat
ttatggcagtttctaaagaacggttgttatggatccccacgggtttcttatcctgcactg
atattgttccttgaagttataccaataaaatctatagaagctgataagttcttcgtgaat
tttttcaaaaacttattggctggaagaagtatatgtgattcttcaagtgcggatcagtta
tcacttcttcgggcaacaactgagtgtttcctctggggattacataatgcttcaaagtac
tgcgttggtcccaattccattcatgatctccaggttgatctaattgataaagttctcgtg
aagattctatgggcagacttctttgaactatctaagggcagcattccacctattcagagg
aagtcagctgaaactcttggcatgggtaattcagttaattatcggcaagagctaggaaga
tgcatcgtagaaatcctttcagggattaatttactcgagcagaacctgctatcttttttc
tgtgaatctgttcaagagagcttcttgaatatgcttcagcagggaaacttagagatagtt
gcgggtagcatgggaaaaatgattgattttcttttgttattggagagatactcagttttg
gaaggtgagagttggcccttggatcagtttatggggccactgctgttcaaggctttcccg
tggataagatcatctgaattgttagatggtgtgaagcttttgtcagtttcagtatcagtg
tttggaccgagaaagatagttccgatactaattaatgatgtagagacttctacccttatc
tctgttgaaaaggggagggatatgagcccagaaaagttcattaaagtttttcaagagatt
ttcattccttggtctatggatgtatctgactcttcaactgcagctagacaagatctccta
ctttcattacttgatgatgaatgtttcactcagcagtggagtgatgtcattttttatgta
tttaatcaacaccgtcagggttgcaataatctggctgccatgaaagtgcttttagagaag
gcaaggggtgaaattacaaaaagaagttctgggcagttgaatcaaagagtaggctctctg
ccagagcattggcatcatagactcatagactcaactgcgataagtcttgtccattcctcc
tcagggactacaacctctgcggctcagttcctgtgttcagttctgggtggttcaactgaa
gactgcaatatttcttttgtgtcaagaagctcgttggtcttgatatataaaggaatcctc
ggaaagctgctatcttttatcaaacagtcaccactatgctcagttaatgatatatgttca
tctcttactgttgaggctatagagtttgatttgagcagtactgtggacgtgatcgtggtt
gctaagtttgcagttgaagttattaatggtagtttcttcagtttgaaggctatgaatcag
gacgccactctactttcaactattttgtcttctattttaatcattgacttggagagtaga
ataacatcactaatggatgatacgcaatatgagtccaaagagaagagaaaggatcggaat
cttgtgtgtgattttattcacgctgtttactctaagatggataatcacttctggaaatcc
atagactatgatgccaggaagagttcagcaatcattttggttcagtcccttaggtccatt
gtcctacttgaggatagtctgcaaccttgtgaacttacgctattgtgtgcttctaggatg
accgaggtgttggaatatctctcactggatcaaagcgataaagaaaagatatgttccctg
ctcctgcttgaaagtgatatatggcctatgtgggtcagccccagcacgtcagctagcata
aatacccatggaaggcctgttcatttgtgtgaattgaggaaatccaggagtgaaagattt
gtttctttcattaacaacctgatcttgaaaatgggaattcaccgatttcttgttggacgc
aaagatgatgggttttcctctcaagcttggctttccgtagagatactctgcacgtgggag
tggccagggagtaacgttcaaacttctttcctgccaacgcttgtctcattttgtaagagt
gaaccgtcgagtgggagcttactaaattccatttttgacatactactcaatggtgccctt
gtacatggagaggatgagatagagagcttggggaacatgtgggttgactttaataataac
atagaggatatcgtagaaccatttttgagggctctagtgtcattgcttcacactttgttc
aaggaggacctttggagagaagaacaagccatggttgctttcaaaatgctcacagataaa
ctttatataggagaagagacgagcacaaagtgtttgagaatcattcctttcattatgagc
attttaatttcaccactacgtacaaaaataaaatctggtgtttctggtaaagatattttg
ctgccactggaagttttgtttagaaattggctggagaaaactttgtcattccctcctctg
gtgttctggcaaagtggagaagatatgcaggattggtttcagcttgttatctcttgttat
cccgtaagtaaaaaggctgaagaagcaaaggaactacagaggcatgtgagcaatgaagag
agaacactcctgcttgacttgttccgcaagcagaagcaagatcctgttgcatcaagtgta
gttacccaacttccagctgtccaaattctgctcgctagactaattgttatcgcagttagt
tactgtggaaacgattttaatgaggatgactgggattttgtcttttctaatttgaagcgt
ctgattcagtctgcagtggttgtgatggaggaaacttctgagaacgtcaatgacttcatt
agtggcgtttcttctgtggagaaggagaatgatactcttgagggacttgggcatattgtg
tttatttctgatccttctataagcaatgctcagaatgctctctcagcattttcgttgctt
aatgctttagtaaagcataaatcgactgaaggtgaagacaatctgaaatccttggcagat
gaaacatgggatccggttaaggatcggatacttgaaggtgttctacgtcttttcttttgc
accggtcttgctgaggctattgctgcttcatattccgcagaggcagcattgattgttgct
tcatttcgagttgatcatttgcaattctgggagttggtggctcaaattgtggtagactct
tctccacgtgccagagatagagctgtcagagcagtggaattttggggtctaagcaaggga
gccataagctctttgtatgcaatgatgtactcttccaatccaatcccgtcattgcaactt
gctgcatacattgttttgtctaccgagcctatttccaggctggccatagttgctgatggg
aatgcaccactgaatgatgagtctctcaatgaccaggactcaatcaatactggtttgcca
tctgaagagaagctacggttaagagatgaagtatcttgtatggttgagaagttaaataat
gaacttcttgatacggatttaactgcaccagaaagggtgcaaacgttcctggcatggtct
ttgttgctctcgcatgttaactctcttccttcactaacacaaggacgagagagactggtg
cagtatatagagaaaactgcaaatccgttgatattagatagtctttttcagcacatacct
ctagaattatacatggcacatagcttgaaaaaaaaagatggggatattccgtctgagtta
tctgttgtagcttctgcagccactcatgcgattatgacaggctcttccctgtcaacggtt
gaatcactttggcctattgaaactggaaagatggcttcgcttgctggggcgatatatggt
ctgatgctacgcgtccttccagcttatgttagagaatggtttagcgaaatgcgagaccgt
tctacatcatctctgattgaagcatttacaagatcgtggtgcagccctactttaatcaag
aatgaactgtctcagataaagaaggcagactttaatgatgagagcttttcagtcagcata
agtaaagcggcaaacgaagtagttgctacatatacgaaggatgaaacagggatggatctc
gtgatccggcttccagtttcttacccactaaggcctgttgacgttaattgcacaaaaagt
attggaataagcgatgcaaagcagaggaagtggttgatgtccatgcagctgtttgttcgt
aatcagaatggggccctggcggaggcgataaggatatggaagcgaaactcggataaagag
tttgaaggagtagaggactgcccgatatgttacagtgtgatacacacagcgaatcatagc
cttccaaggcgggcttgcgtgacgtgcaagtacaagtttcacaaagcatgtttagacaag
tggttctacacgtctagtaagaaactctgccccttgtgccaatctccttgctaa
DBGET
integrated database retrieval system
