Capsella rubella (pink shepherd's-purse): 17876346
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Entry
17876346 CDS
T02984
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03013
Nucleocytoplasmic transport
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
17876346
03015 mRNA surveillance pathway
17876346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17876346
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
17876346
5.6.2.5 RNA 5'-3' helicase
17876346
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
17876346
mRNA cycle factors
Common to processing body (P body) and stress granule
17876346
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
nSTAND3
NPHP3_N
Viral_helicase1
Helicase_RecD
PhoH
ATPase
AAA_16
SRP54
Ribosomal_S13_N
AAA_22
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
17876346
NCBI-ProteinID:
XP_006282104
UniProt:
R0F0D4
LinkDB
All DBs
Position
Unknown
AA seq
1252 aa
AA seq
DB search
MDSEENDLFDTASQPDAVADAYTFLDFETQGDSEFDYPEFRSPTVWLTPSDSISIADASD
RGGGGAAADHQSEASSPSSLSAGNGAKVGRGGVGGSAGVSSSSQVDALAAGMGNLNFEET
GDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKDMN
WDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKP
GVDDEPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVA
YFVFPKEENELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPID
VNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFG
VPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAGKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFKQVLIDESTQAT
EPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPEPNRPMFFYVQLGQEEISASGT
SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFYGGGAGMMGNDNFGSG
NPNADRRGSRGRAGGSYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRG
PVGAVPHAPQPGNPGFGAGRGTSVGGHLPHQQATQHNVGTIGPSMNYPLDSPNSQPSPVG
PLSQPGYGNQAFRDGFSMGGISQDFLGDDFKSQGSYDPYRMADFATQPSQGGYAVDYATQ
GAHGAFPGNFMNQNSQGGYSHFSGNNDFVSQEYMAHGGQGLFNQAGFIDSSQDDGQQNPF
VVNNPNLQSQGPPNSLYSQPFSHYNTQPLNLSGPQQSQPKQTSQNPTHPYNG
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggattctgaagagaacgatctttttgacacggcatcgcagcctgacgcggtggctgac
gcgtatacctttttggatttcgagactcaaggtgattctgagttcgattaccctgagttt
cgatcacctacggtatggcttactccctctgattcaatttctatcgctgacgcttccgat
cgcggtggaggaggagctgccgcggatcatcaatcagaggcttcgtcaccttcttccctc
tctgccgggaatggtgccaaagtgggacgtggtggagttggtggaagtgctggtgttagc
agtagtagtcaggttgatgcattggccgctggtatggggaatttgaacttcgaggagact
ggagatgatgatggttttgattatggtaagaatgatttcaccgagcacgcttgtaagtat
tgtggtatctcgaacccagcttgcgtggttaggtgtaacgtggcttcctgtagaaagtgg
ttctgcaattcaaggggaaacacctcgggctcgcatattgtgaatcatctggtacgagca
aaacacaaggaagtttgtctccatagagacagtccgctaggggaaacaattctcgaatgc
tacaactgtgggtgtcggaatgtctttctcctcggtttcatctcagcaaagacagacagt
gttgtcgtccttctctgtagagatccttgtttaaacgttaatgccctcaaggatatgaac
tgggacctaagtcagtggtgtcccttgattgacgacaggtgtttcctcccctggcttgtt
aaggtcccatcagagcaggaacagctgcgggcacgccaaattagcgcacagcaaataaac
aagatagaggaattgtggaagacaaatccggatgccactcttgaagaccttgaaaaacct
ggtgtagacgatgaacctcagcctgttcaacctaagtatgaagatgcatatcagtatcaa
aatgtgtttgcacctctaatcaagctcgaagcagactatgacaagatgatgaaagagtct
caaagcaaggaaaacctcacagttcggtgggatattggtcttaacaagaagcgtgttgca
tacttcgtcttcccgaaggaggaaaatgaattgcgattggtgccgggtgatgaactacgt
ttgcgctactcgggagatgctgctcatccagcctggcaatcagttggtcatgtgatcaag
ctaacggcacaagaggaggttgcgcttgaactccgagctaatcagggggttccgattgat
gtgaaccatggattcagtgttgattttgtttggaaaagtactagctttgatcgaatgcag
ggagcaatgaagaattttgcggtagatgaaacaagtgtgagtggttatatttaccatcag
ttattgggacatgaagtcgaggcccagatggttcgtaacacactaccgagacgtttcggg
gtacctggtcttccagaactgaatgcatctcaggttaatgcggtgaaaagtgtccttcag
aagcccatcagcttgatccaaggtccacctggtactggtaaaactgttacttctgcagca
attgtgtatcacatggcgaaacagggccagggacaggttctcgtttgtgccccaagtaat
gttgctgtagaccaactagctggtaaaattagtgctactggtttaaaggttgttcgcctt
tgtgcaaaatcaagagaagctgtaagctctcctgtagagcatttaacccttcactaccag
gtacgacatctagacacatctgagaagagcgaactgcataagctacagcagttgaaagat
gaacaaggtgagctgtcaagcagtgatgaaaagaaatacaaaaacttgaaaagagcaaca
gaacgtgagataacccagagtgctgatgtcatatgctgcacgtgtgttggtgctgctgat
cttcgattgtcaaacttcagatttaaacaggtacttattgatgagtctactcaagcaaca
gaacctgagtgccttatccctttggtccttggggtaaaacaggttgttcttgttggtgat
cattgtcagcttggccctgtcattatgtgcaagaaagcagctcgtgctggcttggcacag
tctctctttgaacgccttgtgcttcttggtatcaaaccaatcagattgcaggttcaatat
cgtatgcatccagctttgtcggagtttccatccaacagcttttatgaaggaacactacag
aatggagtcacaattattgagaggcaaacaacagggattgatttcccatggccagagcct
aaccggcctatgtttttctatgttcagctgggacaagaggagatcagtgctagtggaacg
tcgtatcttaatagaaccgaggctgctaatgtggagaaactggtgactgctttcttaaag
agtggagttgtccctagtcagattggtgtgataactccatatgagggacagagggcatac
attgttaattacatggcaagaaatggttctctccgacagcaactttacaaggaaattgag
gttgccagtgttgattcttttcaaggaagggaaaaagattacatcatattgtcctgtgtg
agaagtaatgagcatcagggcattggattccttaatgatccacggaggctcaacgttgca
cttacgcgtgctcggtatggaatagttattctcggaaacccaaaagtactgagtaaacag
cctttgtggaatggattgttgacacattacaaggaacatgagtgcttggttgaaggacct
cttaataatttaaagcagagcatggtacaatttcagaaaccaagaaagatttacaatgat
cggaggctattttatggtggtggcgctggcatgatgggaaatgataattttggttcgggt
aatcccaatgctgacagaagaggcagtcgaggaagggctggtggttcctatcttccttct
ggcccacctaatggcgctagacctggactacatccagctggctaccccatacctagggtt
ccactttcaccctttcctggtggtcctccttctcagccatacgctattccaactcgtgga
cctgtgggtgctgttcctcatgctcctcaacctggaaatcctggttttggagctggtcgt
gggacctcagttggaggccatcttccgcaccaacaagccacccaacataatgttggaact
attggccctagtatgaactacccccttgatagtccaaatagccagccttcacctgttggt
ccgctatcccaacctggatatggtaaccaagcattcagggatggattttctatgggtggc
atatctcaggatttcttgggtgatgattttaagagccagggatcttatgatccttacagg
atggccgactttgctacacagccctcacaaggtggatatgctgttgattacgccacacaa
ggagcacatggggcgtttcctggaaactttatgaaccaaaattctcaaggtggttattct
catttcagcggaaataatgatttcgtgtctcaggagtatatggcacatggaggtcaaggt
cttttcaaccaagctggctttatcgactcatcccaggatgatggacaacagaaccctttt
gttgtgaacaatcctaatctccagtctcagggtcccccgaattcactttactcgcagcct
ttctcacactacaacacacagcctctaaacctttcaggcccacagcaatctcagcctaag
cagacctcacaaaacccaacacatccttacaatggctga
DBGET
integrated database retrieval system
