Capsella rubella (pink shepherd's-purse): 17877272
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Entry
17877272 CDS
T02984
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D
KO
K07466
replication factor A1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03030
DNA replication
crb03420
Nucleotide excision repair
crb03430
Mismatch repair
crb03440
Homologous recombination
crb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
17877272
03420 Nucleotide excision repair
17877272
03430 Mismatch repair
17877272
03440 Homologous recombination
17877272
03460 Fanconi anemia pathway
17877272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crb03000
]
17877272
03032 DNA replication proteins [BR:
crb03032
]
17877272
03400 DNA repair and recombination proteins [BR:
crb03400
]
17877272
Transcription factors [BR:
crb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
17877272
DNA replication proteins [BR:
crb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
17877272
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
17877272
MMR (mismatch excision repair)
17877272
DSBR (double strand breaks repair)
HR (homologous recombination)
17877272
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
DUF5651
Motif
Other DBs
NCBI-GeneID:
17877272
NCBI-ProteinID:
XP_006280119
UniProt:
R0EV75
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MQTSVTAGAISTVLSNPSFDSSSDRPEIVVQVVDLKPIGNRYTFSANDGKTKLKAMFTAS
LTPEIISGKIQNLGLIRLIDFTVNDISSKATKYFLVTKCEAVGSVLDAEINLESKSDEEA
SVPKKQKLEHSPVTPVNDVKMDVSTGITLKPKQEFVSKSASQIMSEQRGNAAPAARMAMT
RRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFND
AARKFYDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNDNSEVEEASSEEMFIPETK
FNFIPIEDLGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVV
SLWNDLATGIGQELLDMADKSPVIAIKSLKVGDFQGVSLSTISRSNVVINPVSPEAKKLK
SWFDSEGKEISMSSIGSGMSPATKNGSRSMYTDRVLLSHITSNPSLGEEKPVFFSTRAYV
SFIKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQKKYEECSLRYIMAVKVTDSSGETWI
SSFNDEAEKILGCSADELNKLRSEEGEVNEYQTRLKEATWSSHVFRVSVTQNEYNGEKRQ
RVTVKGVAPVDFAAEARLLLQDISNKNKASQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcagacttcagtgaccgctggtgctatttccaccgttttgtcgaacccttcctttgat
tcctcctctgatcgtcctgagatcgttgttcaagtcgtcgatcttaagcctattggaaat
agatatacatttagtgcaaatgacggaaagacgaaactcaaagccatgtttacagcttca
ctaacacctgaaattatatctggaaaaattcagaatttgggtctaattcgtctcatcgat
ttcactgttaacgacatttcaagcaaagcaacaaaatatttccttgtcacaaaatgtgaa
gctgttggttctgtgcttgatgctgagattaacttggagagtaagagcgacgaggaggct
agtgtgcccaagaagcagaaacttgagcactctcctgtcactcctgtgaatgatgttaag
atggatgtttctactggtatcactttgaaaccgaagcaggaatttgtatccaaatcagct
tctcagataatgagtgaacaaaggggaaatgccgctccagctgcaagaatggccatgact
agaagggttcacccacttgtgtccttgaatccctatcaaggcaactggaccatcaaagtc
cgagttacaaacaagggagtcatgagaaactacaagaacgctagaggagaagggtgtgtc
ttcaacgtggaactaacagatgaagaaggaacacaaattcaagcaacgatgtttaatgat
gctgcaaggaagttctatgacagattccaattaggaaaggtctattatatatcaagggga
tcacttaaacttgctaacaagcagttcaagacggttcaaaatgattatgagatgacactg
aatgataactcggaggttgaggaagctagtagcgaagaaatgttcatccctgagacaaaa
ttcaactttatacccattgaagatttgggtttgtatgttaatcagaaggaactcattgat
cttatcggagttgttcaaagtgtatctcctaccatgagtattagaaggagaactgacaat
gagatgatccctaagagggatataactttggctgatgagtctaagaaaactgttgtggtg
tccctgtggaacgaccttgcaactggcataggtcaagagctactagacatggctgataag
tcacctgtgattgcaatcaagtctctcaaagttggagattttcaaggtgtttccttgtcc
accatcagcagaagcaatgttgttataaacccagtatcaccagaagctaaaaagctgaaa
tcttggttcgattctgaaggcaaggaaatatccatgtcctccattggctcagggatgagc
ccagctaccaagaatggatctcggtctatgtatactgaccgagtccttctctctcacatc
acaagcaacccatctttaggcgaagaaaagcctgtatttttcagcaccagggcttacgta
agcttcatcaaaccagaccagacaatgtggtaccaagcttgtaagacttgtaacaagaaa
gtgactgaagcacttgactctggttactggtgtgaaggatgccagaaaaaatatgaagaa
tgcagcttaaggtacataatggcggttaaagtcaccgactcatctggagaaacttggatt
tcctcattcaacgatgaagcagagaagatacttgggtgttcagctgacgagctcaacaaa
ctaagatcagaggaaggagaagtgaatgagtatcagacaagactgaaagaagcaacgtgg
tcatctcatgtcttccgtgttagtgtcactcagaatgagtataacggagagaagaggcaa
agggtaactgtgaaaggagtagcccctgttgattttgctgctgaagcaagattattgctc
caagacatctccaacaagaataaagcatctcagtag
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