KEGG   Capsella rubella (pink shepherd's-purse): 17877286
Entry
17877286          CDS       T02984                                 
Name
(RefSeq) histone deacetylase 5 isoform X4
  KO
K11406  histone deacetylase 4/5 [EC:3.5.1.98]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:crb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crb03036]
    17877286
Enzymes [BR:crb01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     17877286
Chromosome and associated proteins [BR:crb03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     17877286
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 17877286
NCBI-ProteinID: XP_006280161
UniProt: R0G941
LinkDB
Position
Unknown
AA seq 625 aa
MDPSSSPSSDNKTVVTSSHLSDMATAGQSSGKYYENLDAEVAGKIQRKVGLIYDETMCKH
DTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKTIS
TKQKDYRRNKIASQLNSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDSGFAIVRPPGHH
AETDEAMGFCLFNNVAVAASYLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFF
SVHRHEYGSFYPSGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVARE
FNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKLMEFTHGKIVMALEGGYNLDSIAK
SSLACVQVLLEDKIIQGSSEAYPFESTWPVIQAVRKRLCAYWPSLADELSWKLINQKIPN
PIILISSSDSETEDDPHGLVYQISKLSIENHQVDTASTSWRADLAKVDIWYASFGSNMWK
PRFLCYIQGGQVDGLKKACVGSMDKSPPKEIVWETFPHRLFFGREYTARWGVGGVAFTNP
LANLNDQTQMCLYRITLEQFNDVLCQENALNLDSDSAIFDLAALQSAENQISILPEAVSL
VCKCCLVGEKRRHSHTYNDLHAFCC
NT seq 1878 nt   +upstreamnt  +downstreamnt
atggacccttcttcttcaccttcctcggacaataagactgtcgtcacatcatcacatctc
tcggatatggccacggccgggcaatcttccgggaaatattacgaaaatttggacgctgaa
gtcgccgggaaaatccagcgaaaggtgggtcttatttacgacgagacaatgtgcaaacac
gacacacctgacggtgaagatcacccagagtgtcccgatcgcatcagagttatctgggag
aagcttcagcttgccggagtttcccaaagatgtgtggttcttggcagtagcaaagcagag
gataagcatctccaattggttcacacaaaggaccatgttaatttagttaagactattagc
acaaaacagaaagattaccggagaaacaagattgcttcacagttgaattcgatttatctc
aacggaggttcatctgaagccgcatatcttgctgctggatctgttgtaaaggtggcagag
aaagttgcagaaggagagttagattctggctttgctattgtcaggccccctgggcaccat
gctgagacagatgaagccatgggtttttgtttattcaacaatgttgctgttgctgctagt
tatctactaaacgaaagaccggatctaggtgtcaagaaaattctgattgttgattgggat
gtccatcacggaaatggcacacagaagatgttctggaaagatcctcgtgtactatttttc
tctgttcataggcatgagtatggaagtttctatccatcaggggatgatggagattataac
atggttggggaaggtccaggtgaaggctttaacataaacgttccatgggatcaaggacga
tgtggagatgcagactatcttgccgcatgggaccatatcttgattcctgtggctagggaa
tttaaccctgatattatattgctctcagctggatttgatgcagctattggtgatccgctc
gggggttgtcgcgtaacaccatatggatattcagttatgttgaagaagctgatggagttt
acacatggaaagattgtgatggccttagagggagggtacaatcttgactcaattgcaaag
tcttcacttgcatgtgtccaagttttgcttgaagataaaataattcaaggttcttctgaa
gcatacccatttgagtctacatggcctgtcatacaagcggtacgcaaaaggctatgcgca
tattggccttcacttgcagatgaattgtcgtggaaactgattaatcagaaaattcctaat
ccaattatccttatctcaagctccgactctgaaactgaagacgatccccatggactcgtg
tatcaaatttcgaaactcagcattgaaaaccaccaagtagatactgcatctacatcttgg
agagctgatctcgcaaaggttgacatttggtatgcttcttttggatccaacatgtggaaa
ccgaggtttctttgctatattcaagggggacaggttgatggactgaaaaaggcatgtgtt
ggttcaatggataaaagtccaccaaaggaaatagtgtgggaaacttttccacatagattg
ttcttcggccgtgaatatacagctcgttggggtgtaggaggagttgctttcaccaatccc
cttgctaatctcaatgatcaaactcaaatgtgtttgtacagaatcacgcttgagcagttc
aacgacgttctgtgtcaagaaaatgctttgaatttggattcagattcggcgatctttgat
ctagctgctcttcagtcagcagagaaccaaatatccattttacctgaggctgtttcgctg
gtatgcaaatgttgtctggttggggaaaaaaggcgacattcccatacttacaatgacttg
cacgctttctgctgttga

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