Capsella rubella (pink shepherd's-purse): 17878230
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Entry
17878230 CDS
T02984
Name
(RefSeq) probable helicase MAGATAMA 3
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17878230
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
17878230
5.6.2.5 RNA 5'-3' helicase
17878230
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
17878230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
17878230
NCBI-ProteinID:
XP_006285280
UniProt:
R0H3S0
LinkDB
All DBs
Position
Unknown
AA seq
1320 aa
AA seq
DB search
MASEGKLLFDLNELPTEDDDGNDNVNCNQPQVVIPSANTNTSGLLATPSSSQDNVNNRVF
SHASTVSGFQPFVRPISAQRTDVSVEQKMGEGSLKASLPSSRPDTLEEAKVASFIVPNDA
GAPEREEGEWTESEVPANENVHSSSDYSNVTEKDEKDNGAIGLDINSSSGLQKRTVNHIS
ESSGKDSTSIDSPQEQGLTVRQRETKGVEASHAIKCANTTVKRKMDHQKETMLGKKRNRQ
TVFLNLEDVKQAGPIKTTTPRRQTFPQPIVTRTVRESRAGPPPAEQGGGIPGHAVYRDQK
PVDTPNGGIHPETSEFKLESNGESQSGAVGKNRRMNGEAGPSAEGSVSRQGSWKQPINSR
QLKSGHSSNRQVSLSSQSSADTKFGNKKFSLFKKQVNSTQYQDTSVERLIREVTNEKFWH
HPEDTDLQCVPERFESMDEYVRVFEPLLFEECRAQLYSTWEESAEANSYMKVRIKFIERR
ERGWYDVILLSVNDCKWAFKEGDVAVLSNPVPESEGEHDDAGRVAGTVRRYIPVDTRDPH
GAILHFYVGDTYDSGSKTDDNHILRKLKPKEIWHLTVLGSLATTQREYVALHAFSQLNPQ
MQNAILRPSPEQFPNYGEQTPTVPDCFTPSFASHLHRSFNAPQLAAIHWAAMHTAAGTSS
GVKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQQYYTSLLKKLAPESYKQVSESG
SDNIVSGSIDEVLQNMDQNLFRTLPKLCAKPRMLVCAPSNAATDELLSRVLDRGFIDGEM
RVYRPDVARVGVDTQTRAAQAVSVERRSEQLLAKSRDEILGHMHNLRLREAQLSQEIAGL
KRELTAAAFANRSQGSVGVDPDVLMARDQTRDALLQRLSAAVEARDKDLVEMSRLLIVEG
KFRAGNNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASE
VGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLAGCPTLLLTVQYR
MHPQIRDFPSRYFYQGRLTDSESVSAAPDEIYYKDSVLKPYLFFDISHGRESHRGGSVSY
ENIDEARFCVGVYLHLQRTLKSLGGGKVSVGVITPYKLQLKCLKIEFGNALGQDELKEIY
INTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRAKRALWVMGNASALMKCE
DWAALITDAKARNCFMEMESLPKDFPVPKVPSFIPKAPNARGFRSGGPRTRSIDMHPESR
SGTPSEDDEKLSTTTFPRNGNIRRENSVDDSDPPGDRYRDAWQHGIQRRQNFGRPLGRRD
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagaaggaaaattgttatttgatcttaatgaacttcctacagaagatgatgat
gggaatgataatgttaactgcaatcagccacaggttgttatcccatctgctaacaccaat
acctctggcttgcttgctacaccatcctcctcccaagataatgtaaacaaccgagtgttc
tcacatgcatcaacggtttctggttttcagccttttgtccgccctatctctgctcaacgt
acggatgtctcagttgaacagaagatgggtgagggttctcttaaggcttcattgccatcg
tcgaggccagacacattagaggaagcaaaggttgcatcattcatagttcctaatgatgcc
ggagcacctgagagagaagaaggagaatggacagagtcggaggttcctgccaatgaaaat
gtacatagtagttctgattattctaatgttacagagaaagatgagaaagataacggtgca
ataggattagatatcaactcatcctctggtcttcaaaagagaaccgtcaatcatatttca
gaaagcagtggtaaagatagtacatcaatagatagtccccaagaacagggtttaacagtg
aggcagagagaaactaaaggagttgaagcaagtcatgcaatcaagtgtgcaaataccact
gtgaaaagaaagatggatcatcagaaagagacgatgttgggtaagaagcgaaacaggcag
accgtgtttctcaacctagaagatgtcaagcaagctggtcctattaagacaactactcct
agaagacagactttcccacaacctattgtcacgcgtacagttagagaatctcgcgcaggt
cctccacctgctgaacaaggaggcgggattccagggcatgctgtataccgggatcagaaa
ccagttgacactccgaatggtggcatacatccagaaacatctgaatttaagttagaatct
aatggtgaatcacaatctggcgcggttggtaaaaataggagaatgaatggggaggcagga
ccttctgctgaaggttctgtgtcaaggcagggttcatggaagcagccaataaattcacgg
cagctgaagagcggtcattcgtcaaatagacaagtctccctgtccagtcaaagttctgct
gacacaaagtttggaaacaagaaattttctttgttcaagaaacaagtcaatagtacccaa
taccaagatacctccgtggagcgtcttatacgagaggtgaccaacgaaaagttctggcat
catccagaggatactgatctccagtgtgttcctgagcggtttgaatccatggatgaatat
gttagagtgtttgaacctttacttttcgaggagtgccgggcacaactttacagtacatgg
gaagaatcggctgaggcaaattcatacatgaaagttagaataaaattcatcgaaagaaga
gagagaggatggtatgatgtgatacttctctcagtaaatgactgtaaatgggctttcaag
gagggagatgttgcagttctttcaaatcctgtgccggaatcagaaggagagcatgatgat
gctggacgtgtagctggtacagttaggagatatataccggttgatactcgagatcctcat
ggagcaattctccatttctatgttggagatacttatgactctggcagcaagactgacgat
aatcatattctacggaagcttaaacctaaggagatctggcatttgacagtgcttggttcg
cttgcaaccacacaaagggaatatgttgctttgcatgcgttttcccagcttaacccacag
atgcaaaatgcaattcttaggcctagcccagagcagtttcctaattacggggagcagact
cctacagtgcccgattgttttactccgagctttgctagccacttacatagaagcttcaat
gctcctcagttggcagcaatccattgggccgcaatgcatactgcagctggtacaagcagt
ggggtaaagaggcaagatccatggccatttactcttgttcagggccctcctggaacaggc
aagacacacacagtttggggaatgttgaatgttatccacttggttcagtatcagcagtat
tacacttccttgctgaagaaattagcacctgaaagttataaacaagttagtgagagcggt
tcagataatattgtgtcgggatcaattgatgaagtcctacaaaacatggaccagaatcta
tttcgtacactgccaaaattgtgcgctaaaccaaggatgctcgtctgtgctccttcaaat
gctgcgaccgatgaacttctttcacgggtccttgatcgcggttttattgatggagaaatg
agagtttatcgtcctgatgtggctagagtaggtgttgatacccaaacgagagctgcacaa
gctgtttctgtagagcgaagaagtgagcaattattagccaagtcccgtgatgaaattcta
ggacacatgcacaaccttagattacgagaagctcaactatctcaagagattgctggactt
aaaagggaacttactgctgcagcctttgctaaccgttctcagggatctgttggcgttgac
cctgatgttcttatggctagagaccagacaagagatgcactgttacagcgtctttcggct
gctgttgaagccagagataaagatcttgttgaaatgtctcgccttctcattgttgaggga
aagtttcgcgcaggtaataattttaatcttgaagaagctcgtgcaagtcttgaggcaagt
ttcgcaaacgaggctgaaatagtttttacaactgtatcaagtagtggtcgtaaactgttt
tctcgccttacgcatggcttcgatatggtggtcatcgatgaggctgcccaagctagtgag
gttggagttcttcctccccttgctcttggtgctgcacgatgtgtacttgtgggtgatcct
cagcagcttcctgctacagtcattagcaaagccgctggaacacttttgtacagtagaagt
ctctttgaaaggtttcaattagcaggttgtccaactttgttgttaacagttcaatatagg
atgcatcctcaaatacgcgatttcccttcaagatatttctaccaaggacgcctcacagac
agtgaaagtgtttctgctgctcctgatgagatttattacaaagattctgtccttaagcct
taccttttctttgatatcagccatgggcgggaatcccatagaggtggatcagtgtcttat
gagaacattgatgaagctcgcttttgtgttggtgtgtacttgcatcttcagagaactctg
aagtcattgggcgggggtaaagtctctgttggggtcataaccccatacaaactgcagttg
aaatgcctgaaaatcgagtttggaaatgctttgggccaagatgaactgaaagagatttat
atcaatactgtagacgcgtttcagggccaagaacgtgatgttataatcatgtcatgtgtg
cgtgcttccaatcatggggttggctttgttgctgatattcggcggatgaatgttgctctc
acccgtgccaaaagggctctatgggtcatgggaaatgcatctgctctaatgaagtgcgag
gattgggcagcactgatcactgatgccaaagcaaggaactgttttatggagatggagtct
cttcccaaggatttcccggttccaaaggtacctagctttatcccgaaagcacctaatgct
agaggtttcagatcaggtgggccaaggaccagatccatcgatatgcaccctgaatccagg
tcagggacaccatcagaagatgacgagaagctgagcacaacaacatttccaagaaatgga
aatattcgaagggagaactcagttgatgattccgatcctcctggggatagatatagagat
gcttggcaacatgggatccaaagaaggcaaaattttggacggcctttagggagaagagac
tag
DBGET
integrated database retrieval system
