Capsella rubella (pink shepherd's-purse): 17878980
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Entry
17878980 CDS
T02984
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17878980
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17878980
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Ortholog
Paralog
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
ODV-E18
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
17878980
NCBI-ProteinID:
XP_006285121
UniProt:
R0GMC6
LinkDB
All DBs
Position
Unknown
AA seq
374 aa
AA seq
DB search
MDSLVITISLVFAILASLLVESSAHNHSDDGYTLATATLNPIDACWRKNPKWSTNRQALA
HCAVGFGKAALGGKAGAIYVVTSPLDDPVKPKPGTLRFGVIQSKPLWITFARSMVIVLKV
ELSVNSYKTIDGRGAKVEIANGPCVRMRLVKHVIIHGISIHDCKPGPKEGPDGDAIRVFQ
SSHIWIDHCFLSRSQDGLIDVISSSTAVTISNNKFTNHDKVILLGHDDKFTGDKVMKVTV
AFNYFGPGLIERMPRVRRGYAHVANNRYDKWKMYAIGGSADPIIFSEGNYFVAPDNKNAK
EVTKRVGSAAEIKKWKWGTSKDVFLNGAFFVPSGGPAVKPAYAKGEAFPVAPGSLVPSLT
ASAGPLNCVVGKIC
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggattctcttgtgataacaatttcacttgtttttgcaattttagcttcccttcttgta
gagtcatcagctcataatcatagtgatgatggctataccctcgccacggcaacactaaat
ccaattgatgcttgctggcgaaaaaacccaaaatggtcgactaaccgtcaagcattagca
cattgcgcggtcgggtttgggaaagctgcgttaggtggcaaagccggtgccatatacgtg
gttacaagcccattagacgaccctgtaaaacctaaacctggaaccctaagatttggagtg
atccaatcaaaacctctatggatcacattcgcacgtagcatggtgatagttttgaaagtc
gagctctcggtgaacagctacaagacgattgatggaagaggtgcaaaagttgaaattgct
aatgggccatgcgtaaggatgagacttgtgaagcatgtcattatacatgggataagtata
catgattgtaaacctggtccaaaggaaggacctgatggtgacgcaatccgagtttttcaa
tcttcacatatttggatcgatcattgtttcctttctcggagtcaagatggtttgatcgat
gtgattagttcttccacggctgtcactatttctaataacaaattcacgaatcacgataaa
gttatattactcggacatgatgacaagtttacgggagataaggtcatgaaagttactgtt
gcattcaactatttcggaccaggtctcattgagagaatgcctagggtaaggagagggtac
gcacatgtagcaaataatagatacgataaatggaaaatgtatgccattggtggaagtgct
gatccaattatctttagtgaaggaaactatttcgttgctcccgacaacaaaaacgctaaa
gaggtgacaaagagagttggtagtgcagctgagattaaaaaatggaaatggggtacttct
aaagacgttttcttgaacggagctttcttcgtgccgtccggcggaccagcagtcaagccg
gcgtacgcaaaaggagaggcgtttccggtggctcccggctctctcgtcccttctcttacc
gcctccgccggtcctctcaattgcgtcgtcggcaaaatatgctaa
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