KEGG   Capsella rubella (pink shepherd's-purse): 17879017
Entry
17879017          CDS       T02984                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03020  RNA polymerase
crb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    17879017
  09124 Replication and repair
   03420 Nucleotide excision repair
    17879017
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17879017
   03400 DNA repair and recombination proteins [BR:crb03400]
    17879017
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     17879017
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      17879017
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 17879017
NCBI-ProteinID: XP_023634892
LinkDB
Position
Unknown
AA seq 203 aa
MSEKGGKGLKSSLKSKDGGKDGNSAKSKKGRKIHFDQGTPEPNYKILNGSDQPFQSFAPK
PAKGEKAPKSSKSSLHSFDLKDLPENAECMMDCEAFQILDGIKGHLVGLSEDPSIKIPVS
YDRALAYVESCVHYSNPQSVRQVLEPLKTHGISDGEMCVIANASPETVDEVLAFIPSLKT
KKDVISQPLEDALVELSKLKKSE
NT seq 612 nt   +upstreamnt  +downstreamnt
atgtcagagaaaggaggcaaagggctcaaatcctctctcaaatctaaagatggagggaag
gatgggaactcagcaaagtccaagaagggtagaaaaatccactttgatcaagggactccg
gaacctaattacaagattctcaacggttctgatcaaccatttcagagttttgctcctaaa
cctgccaaaggagagaaagctcccaagtctagcaaaagctctctgcactcgtttgacctc
aaagatcttcctgagaatgctgaatgcatgatggactgtgaagcttttcagatattagat
ggaattaagggacatttggttgggttatctgaagacccttctattaaaattcctgtatct
tatgacagagcattagcttatgtggagagttgtgttcactactcaaaccctcaatctgtc
agacaagttcttgagcctttgaaaacccatggtatctctgatggcgagatgtgtgtgatt
gcaaatgcctccccagaaactgtagatgaagttcttgcctttattccatcgctgaagact
aaaaaggatgtgatcagtcaacccctggaagatgcattggtggagctatccaagctgaag
aaatcggaatga

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