Capsella rubella (pink shepherd's-purse): 17879020
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Entry
17879020 CDS
T02984
Name
(RefSeq) probable pectate lyase 15 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17879020
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17879020
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
DUF2448
Motif
Other DBs
NCBI-GeneID:
17879020
NCBI-ProteinID:
XP_006282594
UniProt:
R0F1M8
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MASSSQKVISVCFAVFVVLALTVTILRNDEISRSRKLKTEESQSLSSSTMAATRKLKTEE
FQSSNSSTMAATSVGGDEPHQHAVAADPDEVAAEVAKLIQMSEQNRTARRNLGFFSCGTG
NPVDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPTDEDVVNPKPGTLRH
AVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDGRGANVHIANGACITIQFITNVIIHGL
HIHDCKPTGNAMVRSTPTHFGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGS
TAITVSNNHFTHHNEVMLLGHSDTYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVN
NDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDANEWKKWNWRSEGDLL
LNGAFFRSSGAGASASYGRAASLAAKPSSMVDTITSTAGALGCRKGRPC
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcttctcagaaagtgatcagtgtttgctttgctgtgttcgtcgttttagct
ttaacggtgacgattctccggaacgatgagatctctcgctctaggaaactgaaaacagag
gagtcacagagtttaagcagctcaacaatggcggcgacaaggaagctgaaaacagaggag
tttcagagctcaaacagctcaacaatggcggcgacaagtgttggaggtgatgaaccacat
caacacgcggttgctgctgatccagatgaggttgctgctgaagtcgctaagcttattcag
atgagtgaacagaacaggacagcaaggaggaatctaggattcttctcctgtggaactggt
aatccagttgatgactgctggcgttgtgaccgtaactggcataagaaccgtaaacgcctt
gcggattgtgggatcggttttggaaggaacgcaattggtggtcgtgatggacgcttctac
gttgttactgatccgactgatgaagacgttgttaatcccaaacccggaactctacgccat
gctgttattcaggaggagcctctgtggattgtgttcaagagggatatggtgatagagctg
aaacaggagctgatcatgaacagtttcaagaccattgatggacgtggcgccaacgttcat
atagccaatggtgcttgcattaccatccagtttatcaccaatgtcatcattcatggtctt
cacattcatgattgcaagcccactggaaatgcaatggttagaagcaccccaactcacttt
ggttggaggacaatggctgatggtgatgcagtctccatttttggatcatctcatatctgg
gttgatcataactctctctctcactgtgccgatggccttgttgatgctgtcatggggtct
actgctattaccgtttccaataaccactttacacaccacaatgaggtgatgttgcttggt
cacagtgacacgtacacaaaagacaagctgatgcaagtgaccattgcttacaaccatttt
ggtgaaggactggttcagagaatgccaaggtgcagacatgggtacttccatgtggttaac
aacgactacacacactgggagatgtacgccattggtgggagtgcagaaccaaccatcaac
agtcaaggaaacagatatgctgctcccatggaccgcttcgccaaggaggtgactaaaaga
gtggagacagatgcaaatgagtggaagaagtggaattggaggtcagaaggagaccttcta
ctaaatggagcattcttcaggtcatcaggagcaggagcatctgctagctatggaagagcc
gcaagcttagcagctaaaccatcatctatggtcgacactattacctctactgcaggagca
ctaggttgccgtaagggcagaccttgctag
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