Capsella rubella (pink shepherd's-purse): 17879325
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Entry
17879325 CDS
T02984
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17879325
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
17879325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Fungal_KA1
Motif
Other DBs
NCBI-GeneID:
17879325
NCBI-ProteinID:
XP_006285299
UniProt:
R0F8E5
LinkDB
All DBs
Position
Unknown
AA seq
420 aa
AA seq
DB search
MESFRNLKIFFFFFFISTLSSSGAGNLTEQNRVDKSSVLLVNVRSFGARANDHKDHTKAF
VAAWDKACKSYSSSVHLIIPRGEFSVGPLRFSGPCTNVSSLTVLVKASTDLSKYRSGGGW
IQFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSNCKLLPTSLKFVGMNRTVVRRISSVN
SKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQG
NSQITITSIKCGPGHGISVGSLGRYPNEKDVTGLVVKDCKMSGTTNGIRIKTWANSPGLS
AATNMTFQNIIMNNVTNPIIIDQSYCPFSSCISNVPSKVKLSEIYFKNIRGTSSSRIAVQ
LHCSRGMPCKKIYLENVHLDLSSSDGGTKQSRNRGDEAVSSSCRNVRANYIGTQIPPPCH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggagagttttcgtaacctgaaaatattcttcttcttcttcttcatctccacgttatct
tcttctggagcaggtaacttgactgagcaaaacagagtagacaaaagctctgttctcctt
gttaatgtccgtagcttcggtgctcgagctaatgaccataaagaccacaccaaggccttc
gtagcagcatgggacaaggcatgtaaatcatattcaagctctgtacatcttataatccca
agaggtgaattctctgttggtcctctcagattctctggtccttgcactaacgtatcaagt
ctcactgtcctagtcaaggcatcaactgatctgtcaaagtatagatcaggcggtggttgg
attcagtttggatggatcaatggcttaactcttaccggaggtggaacatttgacggtcaa
ggcgctttagcttggccttttaataactgtacttctgattctaactgcaaactcctccca
actagcttgaagtttgtggggatgaacagaacagttgtaagaaggataagctcagtgaac
agcaagttctttcacatagcgttagtagagtgcagagacttcaaaggcacaagactcaac
atcactgctccttctgatagtccaaatacagatggtatccatatcgaacgcagctcgaat
gtgtatttctcgcgttctcatatcgcaactggagatgattgtgtttccataggacaagga
aattctcagatcacaatcacaagtatcaaatgtggaccaggacatggtatcagtgttggg
agtttagggagatatccaaatgagaaagatgtgacagggctggtggtgaaggattgcaag
atgagtggtacaacgaatgggataaggatcaaaacttgggctaattctcctggtctaagt
gctgctaccaacatgacttttcagaacatcattatgaacaatgtgactaatccaatcatc
attgatcagtcttattgtcctttctcttcttgcatttccaatgtaccttcgaaggtgaag
ctgagtgagatatacttcaagaatataagagggacatcatcttcacggatcgcagtgcag
ctgcattgtagcagaggaatgccatgtaaaaaaatatacttagagaatgttcatcttgat
ctttcttcttctgatggaggaacaaaacagagcagaaacagaggagatgaagccgtctct
tcttcttgtagaaacgttagagctaattacattgggactcaaatcccacctccatgtcac
taa
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